Integrated Multi-omics Analyses Identify CDCA5 as a Novel Biomarker Associated with Alternative Splicing, Tumor Microenvironment, and Cell Proliferation in Colon Cancer Via Pan-cancer Analysis

被引:4
|
作者
Bao, Xinyue [1 ]
Leng, Xin [2 ]
Yu, Tianyu [1 ]
Zhu, Junzheya [1 ]
Zhao, Yunhan [1 ]
Yang, Zhiluo [1 ]
Wu, Shaobo [1 ,3 ]
Sun, Qi [1 ,3 ]
机构
[1] Xi An Jiao Tong Univ, Affiliated Hosp 1, Dept Gen Surg, Xian 710061, Peoples R China
[2] Jiangsu Univ, Affiliated Kunshan Hosp, Dept Urol, Suzhou 215300, Peoples R China
[3] Xi An Jiao Tong Univ, Affiliated Hosp 1, Dept Gen Surg, 277 Yanta West Rd, Xian 710061, Peoples R China
来源
JOURNAL OF CANCER | 2024年 / 15卷 / 03期
基金
中国国家自然科学基金;
关键词
CDCA5; pan-cancer analysis; biomarker; prognosis; TCGA; SISTER-CHROMATID COHESION; GENE-EXPRESSION; SORORIN; CHEMOTHERAPY; INHIBITORS; SURVIVAL; PROTEIN;
D O I
10.7150/jca.91082
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Background: CDCA5 has been reported as a gene involved in the cell cycle, however current research provides little details. Our goal was to figure out its functions and probable mechanisms in pan -cancer. Methods: Pan -cancer bulk sequencing data and web -based analysis tools were applied to analyze CDCA5's correlations with the gene expression, clinical prognosis, genetic alterations, promoter methylation, alternative splicing, immune checkpoints, tumor microenvironment and enrichment. Real- time PCR, cell clone formation assay, CCK-8 assay, cell proliferation assay, migration assay, invasion assay and apoptosis assay were used to evaluate the effect of CDCA5 silencing on colon cancer cell lines. Results: CDCA5 is highly expressed in most tumors, which has been linked to a poor prognosis. Immune checkpoints analysis revealed that CDCA5 was associated with the immune gene CD276 in various tumors. Single -cell analysis showed that CDCA5 correlated with proliferating T cell infiltration in COAD. Enrichment analysis demonstrated that CDCA5 may modify cell cycle genes to influence p53 signaling. The examination of DLD1 cells revealed that CDCA5 increased the proliferation and blocked cell apoptosis. Conclusion: This study contributes to the knowledge of the role of CDCA5 in carcinogenesis, highlighting the prognostic potential and carcinogenic involvement of CDCA5 in pan -cancer.
引用
收藏
页码:825 / 840
页数:16
相关论文
共 9 条
  • [1] Multi-omics pan-cancer analyses identify MCM4 as a promising prognostic and diagnostic biomarker
    Li, Yanxing
    Gao, Wentao
    Yang, Zhen
    Hu, Zhenwei
    Li, Jianjun
    SCIENTIFIC REPORTS, 2024, 14 (01)
  • [2] Multi-omics pan-cancer analyses identify MCM4 as a promising prognostic and diagnostic biomarker
    Yanxing Li
    Wentao Gao
    Zhen Yang
    Zhenwei Hu
    Jianjun Li
    Scientific Reports, 14
  • [3] Multi-omics landscape of Interferon-stimulated gene OASL reveals a potential biomarker in pan-cancer: from prognosis to tumor microenvironment
    Liu, Yi
    Yang, Runyu
    Zhang, Mengyao
    Yang, Bingyu
    Du, Yue
    Feng, Hui
    Wang, Wenjuan
    Xue, Busheng
    Niu, Fan
    He, Pengcheng
    FRONTIERS IN IMMUNOLOGY, 2024, 15
  • [4] Decoding the DSCC1 gene as a pan-cancer biomarker in human cancers via comprehensive multi-omics analyses
    Wang, Jingru
    Gilani, Sana Fatima
    Noor, Nazia
    Ahmed, Muhammad Rashid
    Munazir, Mehmooda
    Zubair, Ayesha
    Sultan, Rizwana
    Abdel-Maksoud, Mostafa A.
    Saleh, Ibrahim A.
    Zomot, Naser
    Kodous, Ahmad S.
    Ibrahim, Shebl Salah
    El-Tayeb, Mohamed A.
    Aufy, Mohammed
    Zaky, Mohamed Y.
    Hassan, Syed Sairum
    Hameed, Yasir
    AMERICAN JOURNAL OF TRANSLATIONAL RESEARCH, 2024, 16 (03): : 738 - 754
  • [5] Multi-omics analysis identifies UBA family as potential pan-cancer biomarkers for tumor prognosis and immune microenvironment infiltration
    Wang, Haibin
    Liu, Xinli
    Huang, Hesen
    Tang, Meng
    Li, Jiwei
    Huang, Tingting
    Wang, Shengjie
    FRONTIERS IN IMMUNOLOGY, 2025, 16
  • [6] Pan-cancer analysis identifies NT5E as a novel prognostic biomarker on cancer-associated fibroblasts associated with unique tumor microenvironment
    Xue, Xin-miao
    Liu, Yu-yang
    Chen, Xue-min
    Tao, Bing-yan
    Liu, Peng
    Zhou, Han-wen
    Zhang, Chi
    Wang, Li
    Jiang, Yu-ke
    Ding, Zhi-wei
    Shen, Wei-dong
    Zhang, Jun
    Yang, Shi-ming
    Wang, Fang-yuan
    FRONTIERS IN PHARMACOLOGY, 2022, 13
  • [7] Multi-Omics Analysis of the Tumor Microenvironment in Liver Metastasis of Colorectal Cancer Identified FJX1 as a Novel Biomarker
    Zou, Junwei
    Zhang, Hesong
    Huang, Yong
    Xu, Wenjing
    Huang, Yujin
    Zuo, Siyuan
    Li, Zhenhan
    Zhou, Hailang
    FRONTIERS IN GENETICS, 2022, 13
  • [8] Multi-Omics Pan-Cancer Analysis of Procollagen N-Propeptidase Gene Family of ADAMTS as Novel Biomarkers to Associate with Prognosis, Tumor Immune Microenvironment, Signaling Pathways, and Drug Sensitivities
    Chen, Yuxing
    Xiao, Chaoyu
    Fan, Qingxin
    Zhang, Ye
    Huang, Qiu
    Ou, Yunsheng
    FRONTIERS IN BIOSCIENCE-LANDMARK, 2024, 29 (04):
  • [9] Pan-cancer single cell and spatial transcriptomics analysis deciphers the molecular landscapes of senescence related cancer-associated fibroblasts and reveals its predictive value in neuroblastoma via integrated multi-omics analysis and machine learning
    Li, Shan
    Luo, Junyi
    Liu, Junhong
    He, Dawei
    FRONTIERS IN IMMUNOLOGY, 2024, 15