Identification and Analysis of SOD Family Genes in Peanut (Arachis hypogaea L.) and Their Potential Roles in Stress Responses

被引:10
作者
Yu, Shutao [1 ,2 ]
Wang, Chuantang [1 ,3 ]
Wang, Qi [3 ]
Sun, Quanxi [3 ]
Zhang, Yu [1 ,2 ]
Dong, Jingchao [2 ]
Yin, Yechao [2 ]
Zhang, Shihang [2 ]
Yu, Guoqing [2 ]
机构
[1] Shenyang Agr Univ, Coll Agron, Shenyang 110161, Peoples R China
[2] Inst Sandy Land Management & Utilizat Liaoning, Fuxin 123000, Peoples R China
[3] Shandong Peanut Res Inst, Qingdao 266100, Peoples R China
来源
AGRONOMY-BASEL | 2023年 / 13卷 / 08期
关键词
peanut; SOD; cold; drought; salt; transcription factor; gene family; SUPEROXIDE-DISMUTASE; TRANSCRIPTION FACTOR; TOLERANCE; ARABIDOPSIS;
D O I
10.3390/agronomy13081959
中图分类号
S3 [农学(农艺学)];
学科分类号
0901 ;
摘要
Superoxide dismutases (SODs) are crucial in safeguarding plants against reactive oxygen species (ROS) toxicity caused by abiotic or biotic factors. Although recent research has revealed the involvement of the SOD gene family in plant biological processes, the understanding of the SOD gene family in peanut remains inadequate. This study comprehensively characterizes the SOD gene family in the peanut genome. A total of 25 AhSOD genes were identified and subsequently categorized into three subfamilies: sixteen AhCSDs, six AhFSDs, and three AhMSDs according to the phylogenetic tree. A comprehensive analysis revealed that the AhSOD genes underwent segmental duplications. The majority of AhSOD genes exhibited conserved exon-intron and motif structures within the same subfamily. The examination of cis-acting elements within the promoter regions of SOD genes revealed that the expression of AhSOD was subject to regulation by plant hormones, as well as responses to defense and stress. RNA-seq analysis showed expression diversity of AhSOD genes in various tissues and cold, drought, and salt stresses. Furthermore, the regulation of AhSOD gene expression is anticipated to involve numerous transcription factors. The gene ontology annotation results validate the role of AhSOD genes in various stress stimuli, SOD activity, reactive oxygen species metabolic processes, and cellular oxidant detoxification processes. This investigation serves as the initial genome-wide analysis of the AhSOD gene family, providing a basis for comprehending the function of the AhSOD gene family and enhancing plant tolerance to cold, drought, and salt stresses.
引用
收藏
页数:15
相关论文
共 65 条
[41]   Recent Developments in Enzymatic Antioxidant Defence Mechanism in Plants with Special Reference to Abiotic Stress [J].
Rajput, Vishnu D. ;
Harish ;
Singh, Rupesh Kumar ;
Verma, Krishan K. ;
Sharma, Lav ;
Quiroz-Figueroa, Francisco Roberto ;
Meena, Mukesh ;
Gour, Vinod Singh ;
Minkina, Tatiana ;
Sushkova, Svetlana ;
Mandzhieva, Saglara .
BIOLOGY-BASEL, 2021, 10 (04)
[42]   Impact of Climate Change on Crops Adaptation and Strategies to Tackle Its Outcome: A Review [J].
Raza, Ali ;
Razzaq, Ali ;
Mehmood, Sundas Saher ;
Zou, Xiling ;
Zhang, Xuekun ;
Lv, Yan ;
Xu, Jinsong .
PLANTS-BASEL, 2019, 8 (02)
[43]   Active oxygen species metabolism in neem (Azadirachta indica) seeds exposed to natural ageing and controlled deterioration [J].
Sahu, Alok Kumar ;
Sahu, Balram ;
Soni, Avinash ;
Naithani, Subhash Chandra .
ACTA PHYSIOLOGIAE PLANTARUM, 2017, 39 (09)
[44]   Golgi/plastid-type manganese superoxide dismutase involved in heat-stress tolerance during grain filling of rice [J].
Shiraya, Takeshi ;
Mori, Taiki ;
Maruyama, Tatsuya ;
Sasaki, Maiko ;
Takamatsu, Takeshi ;
Oikawa, Kazusato ;
Itoh, Kimiko ;
Kaneko, Kentaro ;
Ichikawa, Hiroaki ;
Mitsui, Toshiaki .
PLANT BIOTECHNOLOGY JOURNAL, 2015, 13 (09) :1251-1263
[45]   In silico identification and expression analysis of superoxide dismutase (SOD) gene family in Medicago truncatula [J].
Song, Jianbo ;
Zeng, Liming ;
Chen, Rongrong ;
Wang, Yihua ;
Zhou, Yong .
3 BIOTECH, 2018, 8 (08)
[46]   Genome-Wide Analysis and Expression Profile of Superoxide Dismutase (SOD) Gene Family in Rapeseed (Brassica napus L.) under Different Hormones and Abiotic Stress Conditions [J].
Su, Wei ;
Raza, Ali ;
Gao, Ang ;
Jia, Ziqi ;
Zhang, Yi ;
Hussain, Muhammad Azhar ;
Mehmood, Sundas Saher ;
Cheng, Yong ;
Lv, Yan ;
Zou, Xiling .
ANTIOXIDANTS, 2021, 10 (08)
[47]   MEGA11 Molecular Evolutionary Genetics Analysis Version 11 [J].
Tamura, Koichiro ;
Stecher, Glen ;
Kumar, Sudhir .
MOLECULAR BIOLOGY AND EVOLUTION, 2021, 38 (07) :3022-3027
[48]   PlantRegMap: charting functional regulatory maps in plants [J].
Tian, Feng ;
Yang, De-Chang ;
Meng, Yu-Qi ;
Jin, Jinpu ;
Gao, Ge .
NUCLEIC ACIDS RESEARCH, 2020, 48 (D1) :D1104-D1113
[49]   Genome-wide identification and characterization of abiotic-stress responsive SOD (superoxide dismutase) gene family in Brassica juncea and B. rapa [J].
Verma, Deepika ;
Lakhanpal, Neha ;
Singh, Kashmir .
BMC GENOMICS, 2019, 20 (1)
[50]   The origins of genomic duplications in Arabidopsis [J].
Vision, TJ ;
Brown, DG ;
Tanksley, SD .
SCIENCE, 2000, 290 (5499) :2114-2117