Comparison of diagnostic performance of RT-qPCR, RT-LAMP and IgM/IgG rapid tests for detection of SARS-CoV-2 among healthcare workers in Brazil

被引:2
作者
Bernardes, Wilma Patricia de Oliveira Santos [1 ]
Santos, Thais Garcia [1 ]
Fernandes, Nubia Monteiro Goncalves Soares [1 ]
Silva, Thais Barbara de Souza [2 ]
Westin, Mateus [3 ]
Simoes, Taynana Cesar [4 ]
Fernandes e Silva, Eduardo [4 ]
Alves, Breno Magalhaes [5 ]
Molina, Israel [6 ]
Melo, Mariana de Carvalho [5 ]
do Monte-Neto, Rubens Lima [7 ]
da Silva-Pereira, Rosiane A. [1 ]
Alves, Pedro Augusto [2 ]
Fonseca, Cristina Toscano [1 ]
机构
[1] Fundacao Oswaldo Cruz, Grp Pesquisa Biol & Imunol Doencas Infecciosas & P, Inst Rene Rachou, Belo Horizonte, MG, Brazil
[2] Fundacao Oswaldo Cruz, Grp Imunol Doencas Virais, Inst Rene Rachou, Belo Horizonte, MG, Brazil
[3] Univ Fed Minas Gerais, Fac Med, Belo Horizonte, MG, Brazil
[4] Fundacao Oswaldo Cruz, Nucl Estudos Saude Publ & Envelhecimento, Inst Rene Rachou, Belo Horizonte, MG, Brazil
[5] Hosp Metropolitano Doutor Celio Castro, Belo Horizonte, MG, Brazil
[6] Fundacao Oswaldo Cruz, Grp Pesquisa Triatomineos & Epidemiol Doenca Chaga, Inst Rene Rachou, Belo Horizonte, MG, Brazil
[7] Fundacao Oswaldo Cruz, Grp Pesquisa Biotecnol Aplicada Estudo Patogenos B, Inst Rene Rachou, Belo Horizonte, MG, Brazil
关键词
SARS-CoV-2; RT-LAMP; RT-qPCR; TR DPP (R) COVID-19 IgM/IgG Bio-Manguinhos; Accuracy; COVID-19;
D O I
10.1016/j.jiph.2023.05.009
中图分类号
R1 [预防医学、卫生学];
学科分类号
1004 ; 120402 ;
摘要
Background: COVID-19 has become a major public health problem after the outbreak caused by SARS-CoV-2 virus. Great efforts to contain COVID-19 transmission have been applied worldwide. In this context, accurate and fast diagnosis is essential. Methods: In this prospective study, we evaluated the clinical performance of three different RNA-based molecular tests - RT-qPCR (Charite protocol), RT-qPCR (CDC (USA) protocol) and RT-LAMP - and one rapid test for detecting anti-SARS-CoV-2 IgM and IgG antibodies. Results: Our results demonstrate that RT-qPCR using the CDC (USA) protocol is the most accurate diagnostic test among those evaluated, while oro-nasopharyngeal swabs are the most appropriate biological sample. RT-LAMP was the RNA-based molecular test with lowest sensitivity while the serological test presented the lowest sensitivity among all evaluated tests, indicating that the latter test is not a good predictor of disease in the first days after symptoms onset. Additionally, we observed higher viral load in individuals who reported more than 3 symptoms at the baseline. Nevertheless, viral load had not impacted the probability of testing positive for SARS-CoV-2. Conclusion: Our data indicates that RT-qPCR using the CDC (USA) protocol in oro-nasopharyngeal swabs samples should be the method of choice to diagnosis COVID-19. (c) 2023 Published by Elsevier Ltd on behalf of King Saud Bin Abdulaziz University for Health Sciences. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
引用
收藏
页码:1081 / 1088
页数:8
相关论文
共 40 条
[1]   Correlation of Chest CT and RT-PCR Testing for Coronavirus Disease 2019 (COVID-19) in China: A Report of 1014 Cases [J].
Ai, Tao ;
Yang, Zhenlu ;
Hou, Hongyan ;
Zhan, Chenao ;
Chen, Chong ;
Lv, Wenzhi ;
Tao, Qian ;
Sun, Ziyong ;
Xia, Liming .
RADIOLOGY, 2020, 296 (02) :E32-E40
[2]   Optimization and Clinical Validation of Colorimetric Reverse Transcription Loop-Mediated Isothermal Amplification, a Fast, Highly Sensitive and Specific COVID-19 Molecular Diagnostic Too That Is Robust to Detect SARS-CoV-2 Variants of Concern [J].
Alves, Pedro A. ;
de Oliveira, Ellen G. ;
Franco-Luiz, Ana Paula M. ;
Almeida, Leticia T. ;
Goncalves, Amanda B. ;
Borges, Iara A. ;
Rocha, Flavia de S. ;
Rocha, Raissa P. ;
Bezerra, Matheus F. ;
Miranda, Pamella ;
Capanema, Flavio D. ;
Martins, Henrique R. ;
Weber, Gerald ;
Teixeira, Santuza M. R. ;
Wallau, Gabriel Luz ;
Do Monte-Neto, Rubens L. .
FRONTIERS IN MICROBIOLOGY, 2021, 12
[3]  
[Anonymous], 2019, CDC 2019 NOVEL CORON
[4]  
[Anonymous], 2021, B EP ASS COVID19 202
[5]   Effectiveness of the Pfizer-BioNTech and Oxford-AstraZeneca vaccines on covid-19 related symptoms, hospital admissions, and mortality in older adults in England: test negative case-control study [J].
Bernal, Jamie Lopez ;
Andrews, Nick ;
Gower, Charlotte ;
Robertson, Chris ;
Stowe, Julia ;
Tessier, Elise ;
Simmons, Ruth ;
Cottrell, Simon ;
Roberts, Richard ;
O'Doherty, Mark ;
Brown, Kevin ;
Cameron, Claire ;
Stockton, Diane ;
McMenamin, Jim ;
Ramsay, Mary .
BMJ-BRITISH MEDICAL JOURNAL, 2021, 373
[6]   The MIQE Guidelines: Minimum Information for Publication of Quantitative Real-Time PCR Experiments [J].
Bustin, Stephen A. ;
Benes, Vladimir ;
Garson, Jeremy A. ;
Hellemans, Jan ;
Huggett, Jim ;
Kubista, Mikael ;
Mueller, Reinhold ;
Nolan, Tania ;
Pfaffl, Michael W. ;
Shipley, Gregory L. ;
Vandesompele, Jo ;
Wittwer, Carl T. .
CLINICAL CHEMISTRY, 2009, 55 (04) :611-622
[7]   Detection of 2019 novel coronavirus (2019-nCoV) by real-time RT-PCR (Publication with Expression of Concern) [J].
Corman, Victor M. ;
Landt, Olfert ;
Kaiser, Marco ;
Molenkamp, Richard ;
Meijer, Adam ;
Chu, Daniel K. W. ;
Bleicker, Tobias ;
Bruenink, Sebastian ;
Schneider, Julia ;
Schmidt, Marie Luisa ;
Mulders, Daphne G. J. C. ;
Haagmans, Bart L. ;
van der Veer, Bas ;
van den Brink, Sharon ;
Wijsman, Lisa ;
Goderski, Gabriel ;
Romette, Jean-Louis ;
Ellis, Joanna ;
Zambon, Maria ;
Peiris, Malik ;
Goossens, Herman ;
Reusken, Chantal ;
Koopmans, Marion P. G. ;
Drosten, Christian .
EUROSURVEILLANCE, 2020, 25 (03) :23-30
[8]   Diagnostic performance of commercially available COVID-19 serology tests in Brazil [J].
Cota, Glaucia ;
Freire, Mariana Lourenco ;
de Souza, Carolina Senra ;
Pedras, Mariana Junqueira ;
Saliba, Juliana Wilke ;
Faria, Veronica ;
Alves, Lindicy Leidicy ;
Rabello, Ana ;
Avelar, Daniel Moreira .
INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES, 2020, 101 :382-390
[9]  
De Marinis Yang, 2020, Infection Ecology & Epidemiology, V10, P1821513, DOI 10.1080/20008686.2020.1821513
[10]   In-Depth Longitudinal Comparison of Clinical Specimens to Detect SARS-CoV-2 [J].
Defeche, Justine ;
Azarzar, Samira ;
Mesdagh, Alyssia ;
Dellot, Patricia ;
Tytgat, Amandine ;
Bureau, Fabrice ;
Gillet, Laurent ;
Belhadj, Yasmine ;
Bontems, Sebastien ;
Hayette, Marie-Pierre ;
Schils, Raphael ;
Rahmouni, Souad ;
Ernst, Marie ;
Moutschen, Michel ;
Darcis, Gilles .
PATHOGENS, 2021, 10 (11)