Genome-wide perturbations of A-to-I RNA editing dysregulated circular RNAs promoting the development of cervical cancer

被引:7
|
作者
Wang, Yulan [1 ]
Zhao, Jian [1 ]
Wu, Jing [2 ]
Liu, Jingjing [1 ]
Wang, Yixuan [1 ]
Xu, Tianyi [3 ,4 ,5 ]
Zhang, Meng [1 ]
Zhuang, Minhui [1 ]
Zou, Lingxiao [1 ]
Sun, Wei [6 ]
Han, Ping [6 ]
Song, Xiaofeng [1 ]
机构
[1] Nanjing Univ Aeronaut & Astronaut, Dept Biomed Engn, Nanjing 211106, Peoples R China
[2] Nanjing Med Univ, Sch Biomed Engn & Informat, Nanjing 211166, Peoples R China
[3] Chinese Acad Sci, Natl Genom Data Ctr, Beijing 100101, Peoples R China
[4] Chinese Acad Sci, Beijing Inst Genom, CAS Key Lab Genome Sci & Informat, Beijing 100101, Peoples R China
[5] China Natl Ctr Bioinformat, Beijing 100101, Peoples R China
[6] Nanjing Med Univ, Affiliated Hosp 1, Dept Gynecol & Obstet, Nanjing 210029, Peoples R China
基金
中国国家自然科学基金;
关键词
RNA editing; circRNA; Alu element; Cervical cancer; ceRNA; ADENOSINE DEAMINASES; INOSINE RNA; WEB SERVER; ADARS; BIOMARKER; ROLES; SITES; ACT;
D O I
10.1016/j.compbiomed.2023.107546
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Cervical cancer, the second most common female malignant tumor, seriously threatens women's health and lives. Despite the availability of the HPV vaccine, effective treatment options for cervical cancer are still lacking. New research perspectives now clarify that RNA editing dysregulation and changes in circRNA expression are jointly involved in disease pathogenesis, so molecular changes associated with circRNA and RNA editing may provide clues for the development of new therapeutic strategies for cervical cancer. In this study, we designed a series of pipelines to identify and analyze dysregulated RNA editing events in circRNAs. Our findings indicate a decrease in A-to-I RNA editing levels in cervical cancer compared to normal tissues, and editing may influence the back-splicing process of circRNAs through structural modifications of Alu elements. Moreover, our research reveals that RNA editing could modulate circRNA biogenesis by influencing RNA binding protein (RBP) binding on a transcriptome-wide scale, as well as influence the expression and coding potential of circRNAs. Importantly, we identified three RNA editing sites that could serve as potential biomarkers. In summary, our study presents a comprehensive landscape of RNA editing perturbations in circRNAs, providing new insights into the complex relationship between RNA editing and circRNA dysregulation in cervical cancer.
引用
收藏
页数:13
相关论文
共 20 条
  • [1] Genome-wide evaluation and discovery of vertebrate A-to-I RNA editing sites
    Maas, S.
    Sie, C. P. Godfried
    Stoev, I.
    Dupuis, D. E.
    Latona, J.
    Porman, A. M.
    Evans, B.
    Rekawek, P.
    Kluempers, V.
    Mutter, M.
    Gommans, W. M.
    Lopresti, D.
    BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2011, 412 (03) : 407 - 412
  • [2] Genome-wide identification of A-to-I RNA editing events provides the functional implications in PDAC
    Mei, Yue
    Liang, Dong
    Ai, Bin
    Wang, Tengjiao
    Guo, Shiwei
    Jin, Gang
    Yu, Dong
    FRONTIERS IN ONCOLOGY, 2023, 13
  • [3] Genome-wide analysis of A-to-I RNA editing by single-molecule sequencing in Drosophila
    St Laurent, Georges
    Tackett, Michael R.
    Nechkin, Sergey
    Shtokalo, Dmitry
    Antonets, Denis
    Savva, Yiannis A.
    Maloney, Rachel
    Kapranov, Philipp
    Lawrence, Charles E.
    Reenan, Robert A.
    NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2013, 20 (11) : 1333 - U141
  • [4] Genome-wide expression changes mediated by A-to-I RNA editing correlate with hepatic oncogenesis
    Li, Jian
    Li, Qun
    Yu, Chun-Peng
    Chang, Shuai
    Xie, Ling-Ling
    Wang, Song
    TRANSLATIONAL CANCER RESEARCH, 2021, 10 (06) : 2725 - +
  • [5] Genome-wide identification and analysis of A-to-I RNA editing events in bovine by transcriptome sequencing
    Bakhtiarizadeh, Mohammad Reza
    Salehi, Abdolreza
    Rivera, Rocio Melissa
    PLOS ONE, 2018, 13 (02):
  • [6] ADAR2-dependent A-to-I RNA editing in the extracellular linear and circular RNAs
    Hosaka, Takashi
    Yamashita, Takenari
    Teramoto, Sayaka
    Hirose, Naoki
    Tamaoka, Akira
    Kwak, Shin
    NEUROSCIENCE RESEARCH, 2019, 147 : 48 - 57
  • [7] Genome-wide identification and analysis of A-to-I RNA editing events in the malignantly transformed cell lines from bronchial epithelial cell line induced by α-particles radiation
    Liu, Qiaowei
    Li, Hao
    You, Lukuan
    Li, Tao
    Li, Lingling
    Zhou, Pingkun
    Bo, Xiaochen
    Chen, Hebing
    Chen, Xiaohua
    Hu, Yi
    PLOS ONE, 2019, 14 (06):
  • [8] A-to-I RNA editing of BLCAP lost the inhibition to STAT3 activation in cervical cancer
    Chen, Wen
    He, Wenrong
    Cai, Hongbing
    Hu, Bicheng
    Zheng, Caishang
    Ke, Xianliang
    Xie, Li
    Zheng, Zhenhua
    Wu, Xinxing
    Wang, Hanzhong
    ONCOTARGET, 2017, 8 (24) : 39417 - 39429
  • [9] The Genome-Wide Characterization of Alternative Splicing and RNA Editing in the Development of Coprinopsis cinerea
    Xie, Yichun
    Chan, Po-Lam
    Kwan, Hoi-Shan
    Chang, Jinhui
    JOURNAL OF FUNGI, 2023, 9 (09)
  • [10] Genome-Wide Identification of RNA Editing Sites Affecting Muscle Development in Yak
    Wu, Xiaoyun
    Chu, Min
    Ma, Xiaoming
    Pei, Jie
    Xiong, Lin
    Guo, Xian
    Liang, Chunnian
    Yan, Ping
    FRONTIERS IN VETERINARY SCIENCE, 2022, 9