TNT version 1.6, with a graphical interface for MacOS and Linux, including new routines in parallel

被引:264
作者
Goloboff, Pablo A. [1 ,2 ]
Morales, Martin E. [1 ]
机构
[1] Fdn Miguel Lillo, Consejo Nacl Invest Cient & Tecn, Unidad Ejecutora Lillo, Miguel Lillo 251, RA-4000 San Miguel De Tucuman, Argentina
[2] Amer Museum Nat Hist, Cent Pk West 79th St, New York, NY 10024 USA
基金
美国国家科学基金会;
关键词
PHYLOGENY;
D O I
10.1111/cla.12524
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
A new graphical user interface (GUI) for the parsimony program TNT is presented that works under the Linux and Mac operating systems, as well as the Cygwin environment (which runs under Windows). The new interface is based on the GIMP Tool Kit, GTK (version 3). Formerly, only Windows versions of TNT had a GUI. The new interface improves upon the existing Windows GUI in several respects. These changes, together with several additions to the program since the publication of version 1.5, warrant a change in minor version, thus moving from version 1.5 to 1.6. Among the most notable improvements are the possibility to access graphical user dialogs by means of simple commands, to easily save trees in SVG format ( "Scalable Vector Graphics ") directly from any tree-diagram being displayed, and to manage analyses in parallel (using multiple processors, by means of the PVM system or "Parallel Virtual Machine "), as well as a generally more stable and consistent behaviour. As the binaries for the new version are compiled as native 64-bit applications, this removes the limitations for accessing large amounts of memory in the previous GUI Windows interface (which is a 32-bit application).(c) 2023 Willi Hennig Society..
引用
收藏
页码:144 / 153
页数:10
相关论文
共 28 条
[1]  
Alachiotis N., 2011, C FIELD PROGR LOG AP, P1, DOI [10.1109/FPL.2011.83, DOI 10.1109/FPL.2011.83]
[2]   FPGA Hardware Acceleration of a Phylogenetic Tree Reconstruction with Maximum Parsimony Algorithm [J].
Block, Henry ;
Maruyama, Tsutomu .
IEICE TRANSACTIONS ON INFORMATION AND SYSTEMS, 2017, E100D (02) :256-264
[3]   PHYLOGENETICS OF SEED PLANTS - AN ANALYSIS OF NUCLEOTIDE-SEQUENCES FROM THE PLASTID GENE RBCL [J].
CHASE, MW ;
SOLTIS, DE ;
OLMSTEAD, RG ;
MORGAN, D ;
LES, DH ;
MISHLER, BD ;
DUVALL, MR ;
PRICE, RA ;
HILLS, HG ;
QIU, YL ;
KRON, KA ;
RETTIG, JH ;
CONTI, E ;
PALMER, JD ;
MANHART, JR ;
SYTSMA, KJ ;
MICHAELS, HJ ;
KRESS, WJ ;
KAROL, KG ;
CLARK, WD ;
HEDREN, M ;
GAUT, BS ;
JANSEN, RK ;
KIM, KJ ;
WIMPEE, CF ;
SMITH, JF ;
FURNIER, GR ;
STRAUSS, SH ;
XIANG, QY ;
PLUNKETT, GM ;
SOLTIS, PS ;
SWENSEN, SM ;
WILLIAMS, SE ;
GADEK, PA ;
QUINN, CJ ;
EGUIARTE, LE ;
GOLENBERG, E ;
LEARN, GH ;
GRAHAM, SW ;
BARRETT, SCH ;
DAYANANDAN, S ;
ALBERT, VA .
ANNALS OF THE MISSOURI BOTANICAL GARDEN, 1993, 80 (03) :528-580
[4]  
De Laet J., 2018, COMPUTER PROGRAM DOC
[5]  
De Laet Jan E., 2005, P81
[6]  
Farris J.S., 1983, Advances in Cladistics, V2, P7
[7]   METHODS FOR COMPUTING WAGNER TREES [J].
FARRIS, JS .
SYSTEMATIC ZOOLOGY, 1970, 19 (01) :83-&
[8]  
Goloboff P., 2022, PHYLOGENETIC ANAL MO, V2
[9]  
Goloboff P., 2022, PHYLOGENETIC ANAL MO, V1
[10]  
Goloboff PA, 2004, CLADISTICS, V20, P84