Establishment and characterization of CSCRi006-A: an induced pluripotent stem cell line generated from a patient with Diamond-Blackfan Anemia (DBA) carrying ribosomal protein S19 (RPS19) mutation

被引:2
作者
Rani, Sonam [1 ,2 ]
Thamodaran, Vasanth [1 ,4 ]
Nandy, Krittika [1 ,2 ]
Fouzia, N. A. [3 ]
Maddali, Madhavi [3 ]
Rajesh, Praveena [1 ]
Vijayanand, S. [2 ]
David, Ernest [2 ]
Velayudhan, Shaji R. [1 ,3 ]
机构
[1] Christian Med Coll & Hosp, Ctr Stem Cell Res, Vellore, India
[2] Thiruvalluvar Univ, Dept Biotechnol, Vellore, India
[3] Christian Med Coll & Hosp, Dept Hematol, Vellore, India
[4] Tata Inst Genet & Soc, Bangalore, India
关键词
Episomal; Fibroblasts; IPS cells; Disease modeling; DBA;
D O I
10.1007/s13577-023-00946-y
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Diamond-Blackfan anemia (DBA) is a congenital hypoplastic anemia characterized by ineffective erythropoiesis. DBA is majorly caused by mutations in the ribosomal protein (RP) genes (Gadhiya and Wills in Diamond-Blackfan Anemia, https:// www.statpearls.com/; 2023). A suitable disease model that yields a continuous supply of erythroid cells is required to study disease pathogenesis and drug discovery. Toward this, we reprogrammed dermal fibroblasts from a DBA patient with a heterozygous mutation c.22-23delAG in the RPS19 gene identified through exome sequencing. To generate induced pluripotent stem cells (iPSCs), we induced episomal expression of the reprogramming factors OTC3/4, L-MYC, LIN28, SOX2, and KLF4, and a p53 shRNA(2). The DBA-iPSC line CSCRi006-A generated during this study was extensively characterized for its pluripotency and genome stability. The clone retained normal karyotype and showed high expression levels of pluripotency markers, OCT4, NANOG, SOX2, TRA-I- 60, TRA-I- 81, and SSEA4. It could differentiate into cells originating from all three germ cell layers, as identified by immunostaining for SOX17 (endoderm), Brachyury (mesoderm), and PAX6 (ectoderm). IPSCs provide a renewable source of cells for in vitro disease modeling. CSCRi006-A, a thoroughly characterized iPSC line carrying heterozygous RPS19 c.22-23delAG mutation, is a valuable cell line for the disease modeling of DBA. This iPSC line can be differentiated into different blood cell types to study the mechanisms of disease development and identify potential treatments.
引用
收藏
页码:2204 / 2213
页数:10
相关论文
共 23 条
[1]   A global reference for human genetic variation [J].
Altshuler, David M. ;
Durbin, Richard M. ;
Abecasis, Goncalo R. ;
Bentley, David R. ;
Chakravarti, Aravinda ;
Clark, Andrew G. ;
Donnelly, Peter ;
Eichler, Evan E. ;
Flicek, Paul ;
Gabriel, Stacey B. ;
Gibbs, Richard A. ;
Green, Eric D. ;
Hurles, Matthew E. ;
Knoppers, Bartha M. ;
Korbel, Jan O. ;
Lander, Eric S. ;
Lee, Charles ;
Lehrach, Hans ;
Mardis, Elaine R. ;
Marth, Gabor T. ;
McVean, Gil A. ;
Nickerson, Deborah A. ;
Wang, Jun ;
Wilson, Richard K. ;
Boerwinkle, Eric ;
Doddapaneni, Harsha ;
Han, Yi ;
Korchina, Viktoriya ;
Kovar, Christie ;
Lee, Sandra ;
Muzny, Donna ;
Reid, Jeffrey G. ;
Zhu, Yiming ;
Chang, Yuqi ;
Feng, Qiang ;
Fang, Xiaodong ;
Guo, Xiaosen ;
Jian, Min ;
Jiang, Hui ;
Jin, Xin ;
Lan, Tianming ;
Li, Guoqing ;
Li, Jingxiang ;
Li, Yingrui ;
Liu, Shengmao ;
Liu, Xiao ;
Lu, Yao ;
Ma, Xuedi ;
Tang, Meifang ;
Wang, Bo .
NATURE, 2015, 526 (7571) :68-+
[2]   Emerging Therapeutic Approaches for Diamond Blackfan Anemia [J].
Aspesi, Anna ;
Borsotti, Chiara ;
Follenzi, Antonia .
CURRENT GENE THERAPY, 2018, 18 (06) :327-335
[3]   Generation of an induced pluripotent stem cell line that mimics the disease phenotypes from a patient with Fanconi anemia by conditional complementation [J].
Bharathan, Sumitha Prameela ;
Nandy, Krittika ;
Palani, Dhavapriya ;
Janet, Nancy Beryl ;
Natarajan, Kasthuri ;
George, Biju ;
Srivastava, Alok ;
Velayudhan, Shaji Ramachandran .
STEM CELL RESEARCH, 2017, 20 :54-57
[4]   Diamond-Blackfan anaemia caused by a de novo initiation codon mutation resulting in a shorter isoform of GATA1 [J].
Chen, Tongtong ;
Zhang, Qianqian ;
Shang, Xuan ;
Zou, Shaomin ;
Qin, Jiaofeng ;
Li, Kui ;
Lin, Bin ;
Tao, Zhenzhong ;
Long, Xingjiang ;
Xu, Xiangmin .
CLINICAL GENETICS, 2022, 102 (06) :548-554
[5]   Molecular approaches to diagnose Diamond-Blackfan anemia: The EuroDBA experience [J].
Da Costa, Lydie ;
O'Donohue, Marie-Francoise ;
van Dooijeweert, Birgit ;
Albrecht, Katarzyna ;
Unal, Sule ;
Ramenghi, Ugo ;
Leblanc, Thierry ;
Dianzani, Irma ;
Tamary, Hannah ;
Bartels, Marije ;
Gleizes, Pierre-Emmanuel ;
Wlodarski, Marcin ;
MacInnes, Alyson W. .
EUROPEAN JOURNAL OF MEDICAL GENETICS, 2018, 61 (11) :664-673
[6]  
Engidaye Getabalew, 2019, EJIFCC, V30, P67
[7]   De novo TP53 germline activating mutations in two patients with the phenotype mimicking Diamond-Blackfan anemia [J].
Fedorova, Daria ;
Ovsyannikova, Galina ;
Kurnikova, Maria ;
Pavlova, Anna ;
Konyukhova, Tatiana ;
Pshonkin, Alexey ;
Smetanina, Nataliya .
PEDIATRIC BLOOD & CANCER, 2022, 69 (04)
[8]  
Gadhiya K., 2023, StatPearls
[9]   Ribosomal and hematopoietic defects in induced pluripotent stem cells derived from Diamond Blackfan anemia patients [J].
Garcon, Loic ;
Ge, Jingping ;
Manjunath, Shwetha H. ;
Mills, Jason A. ;
Apicella, Marisa ;
Parikh, Shefali ;
Sullivan, Lisa M. ;
Podsakoff, Gregory M. ;
Gadue, Paul ;
French, Deborah L. ;
Mason, Philip J. ;
Bessler, Monica ;
Weiss, Mitchell J. .
BLOOD, 2013, 122 (06) :912-921
[10]  
Hamosh A, 2005, NUCLEIC ACIDS RES, V33, pD514