Systematic review of type 1 diabetes biomarkers reveals regulation in circulating proteins related to complement, lipid metabolism, and immune response

被引:14
作者
Sarkar, Soumyadeep [1 ]
Elliott, Emily C. [1 ]
Henry, Hayden R. [1 ]
Ludovico, Ivo Diaz [1 ]
Melchior, John T. [1 ,2 ]
Frazer-Abel, Ashley [3 ]
Webb-Robertson, Bobbie-Jo [1 ]
Davidson, W. Sean [2 ]
Holers, V. Michael [3 ]
Rewers, Marian J. [4 ]
Metz, Thomas O. [1 ]
Nakayasu, Ernesto S. [1 ]
机构
[1] Pacific Northwest Natl Lab, Biol Sci Div, Richland, WA 99354 USA
[2] Univ Cincinnati, Coll Med, Dept Pathol & Lab Med, Cincinnati, OH USA
[3] Univ Colorado, Div Rheumatol, Dept Med, Anschutz Med Campus, Aurora, CO USA
[4] Univ Colorado, Barbara Davis Ctr Diabet, Sch Med, Anschutz Med Campus, Aurora, CO USA
关键词
Type; 1; diabetes; Biomarker; Plasma; Proteomics; APOLIPOPROTEIN A-IV; HIGH-DENSITY-LIPOPROTEINS; EXTRACELLULAR-MATRIX; GLUCOSE-HOMEOSTASIS; INNATE IMMUNITY; PLASMA; EXPRESSION; AUTOANTIBODIES; MOUSE; PHAGOCYTOSIS;
D O I
10.1186/s12014-023-09429-6
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
BackgroundType 1 diabetes (T1D) results from an autoimmune attack of the pancreatic & beta; cells that progresses to dysglycemia and symptomatic hyperglycemia. Current biomarkers to track this evolution are limited, with development of islet autoantibodies marking the onset of autoimmunity and metabolic tests used to detect dysglycemia. Therefore, additional biomarkers are needed to better track disease initiation and progression. Multiple clinical studies have used proteomics to identify biomarker candidates. However, most of the studies were limited to the initial candidate identification, which needs to be further validated and have assays developed for clinical use. Here we curate these studies to help prioritize biomarker candidates for validation studies and to obtain a broader view of processes regulated during disease development.MethodsThis systematic review was registered with Open Science Framework (https://doi.org/10.17605/OSF.IO/N8TSA). Using PRISMA guidelines, we conducted a systematic search of proteomics studies of T1D in the PubMed to identify putative protein biomarkers of the disease. Studies that performed mass spectrometry-based untargeted/targeted proteomic analysis of human serum/plasma of control, pre-seroconversion, post-seroconversion, and/or T1D-diagnosed subjects were included. For unbiased screening, 3 reviewers screened all the articles independently using the pre-determined criteria.ResultsA total of 13 studies met our inclusion criteria, resulting in the identification of 266 unique proteins, with 31 (11.6%) being identified across 3 or more studies. The circulating protein biomarkers were found to be enriched in complement, lipid metabolism, and immune response pathways, all of which are found to be dysregulated in different phases of T1D development. We found 2 subsets: 17 proteins (C3, C1R, C8G, C4B, IBP2, IBP3, ITIH1, ITIH2, BTD, APOE, TETN, C1S, C6A3, SAA4, ALS, SEPP1 and PI16) and 3 proteins (C3, CLUS and C4A) have consistent regulation in at least 2 independent studies at post-seroconversion and post-diagnosis compared to controls, respectively, making them strong candidates for clinical assay development.ConclusionsBiomarkers analyzed in this systematic review highlight alterations in specific biological processes in T1D, including complement, lipid metabolism, and immune response pathways, and may have potential for further use in the clinic as prognostic or diagnostic assays.
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页数:16
相关论文
共 72 条
[41]   Serum Proteomes Distinguish Children Developing Type 1 Diabetes in a Cohort With HLA-Conferred Susceptibility [J].
Moulder, Robert ;
Bhosale, Santosh D. ;
Erkkila, Timo ;
Laajala, Essi ;
Salmi, Jussi ;
Nguyen, Elizabeth V. ;
Kallionpaa, Henna ;
Mykkanen, Juha ;
Vaha-Makila, Mari ;
Hyoty, Heikki ;
Veijola, Riitta ;
Ilonen, Jorma ;
Simell, Tuula ;
Toppari, Jorma ;
Knip, Mikael ;
Goodlett, David R. ;
Lahdesmaki, Harri ;
Simell, Olli ;
Lahesmaa, Riitta .
DIABETES, 2015, 64 (06) :2265-2278
[42]   Pancreatic beta cell autophagy is impaired in type 1 diabetes [J].
Muralidharan, Charanya ;
Conteh, Abass M. ;
Marasco, Michelle R. ;
Crowder, Justin J. ;
Kuipers, Jeroen ;
de Boer, Pascal ;
Linnemann, Amelia K. .
DIABETOLOGIA, 2021, 64 (04) :865-877
[43]   The cytoskeleton in phagocytosis and macropinocytosis [J].
Mylvaganam, Sivakami ;
Freeman, Spencer A. ;
Grinstein, Sergio .
CURRENT BIOLOGY, 2021, 31 (10) :R619-R632
[44]   Plasma protein biomarkers predict the development of persistent autoantibodies and type 1 diabetes 6 months prior to the onset of autoimmunity [J].
Nakayasu, Ernesto S. ;
Bramer, Lisa M. ;
Ansong, Charles ;
Schepmoes, Athena A. ;
Fillmore, Thomas L. ;
Gritsenko, Marina A. ;
Clauss, Therese R. ;
Gao, Yuqian ;
Piehowski, Paul D. ;
Stanfill, Bryan A. ;
Engel, Dave W. ;
Orton, Daniel J. ;
Moore, Ronald J. ;
Qian, Wei-Jun ;
Sechi, Salvatore ;
Frohnert, Brigitte I. ;
Toppari, Jorma ;
Ziegler, Anette-G. ;
Lernmark, Ake ;
Hagopian, William ;
Akolkar, Beena ;
Smith, Richard D. ;
Rewers, Marian J. ;
Webb-Robertson, Bobbie-Jo M. ;
Metz, Thomas O. .
CELL REPORTS MEDICINE, 2023, 4 (07)
[45]  
Nakayasu ES, 2022, medRxiv, DOI [10.1101/2022.12.07.22283187, 10.1101/2022.12.07.22283187, DOI 10.1101/2022.12.07.22283187]
[46]   Tutorial: best practices and considerations for mass-spectrometry-based protein biomarker discovery and validation [J].
Nakayasu, Ernesto S. ;
Gritsenko, Marina ;
Piehowski, Paul D. ;
Gao, Yuqian ;
Orton, Daniel J. ;
Schepmoes, Athena A. ;
Fillmore, Thomas L. ;
Frohnert, Brigitte I. ;
Rewers, Marian ;
Krischer, Jeffrey P. ;
Ansong, Charles ;
Suchy-Dicey, Astrid M. ;
Evans-Molina, Carmella ;
Qian, Wei-Jun ;
Webb-Robertson, Bobbie-Jo M. ;
Metz, Thomas O. .
NATURE PROTOCOLS, 2021, 16 (08) :3737-3760
[47]   Localization of type 1 diabetes susceptibility to the MHC class I genes HLA-B and HLA-A [J].
Nejentsev, Sergey ;
Howson, Joanna M. M. ;
Walker, Neil M. ;
Szeszko, Jeffrey ;
Field, Sarah F. ;
Stevens, Helen E. ;
Reynolds, Pamela ;
Hardy, Matthew ;
King, Erna ;
Masters, Jennifer ;
Hulme, John ;
Maier, Lisa M. ;
Smyth, Deborah ;
Bailey, Rebecca ;
Cooper, Jason D. ;
Ribas, Gloria ;
Campbell, R. Duncan ;
Clayton, David G. ;
Todd, John A. .
NATURE, 2007, 450 (7171) :887-U19
[48]   Contribution of the innate immune system to autoimmune diabetes: A role for the CR1/CR2 complement receptors [J].
Noorchashm, H ;
Moore, DJ ;
Lieu, YK ;
Noorchashm, N ;
Schlachterman, A ;
Song, HK ;
Lambris, JD ;
Barker, CF ;
Naji, A .
CELLULAR IMMUNOLOGY, 1999, 195 (01) :75-79
[49]   iTRAQ Underestimation in Simple and Complex Mixtures: "The Good, the Bad and the Ugly" [J].
Ow, Saw Yen ;
Salim, Malinda ;
Noirel, Josselin ;
Evans, Caroline ;
Rehman, Ishtiaq ;
Wright, Phillip C. .
JOURNAL OF PROTEOME RESEARCH, 2009, 8 (11) :5347-5355
[50]   Gene expression profiles for the human pancreas and purified islets in Type 1 diabetes: new findings at clinical onset and in long-standing diabetes [J].
Planas, R. ;
Carrillo, J. ;
Sanchez, A. ;
Ruiz de Villa, M. C. ;
Nunez, F. ;
Verdaguer, J. ;
James, R. F. L. ;
Pujol-Borrell, R. ;
Vives-Pi, M. .
CLINICAL AND EXPERIMENTAL IMMUNOLOGY, 2010, 159 (01) :23-44