Structural basis of gRNA stabilization and mRNA recognition in trypanosomal RNA editing

被引:15
作者
Liu, Shiheng [1 ,2 ]
Wang, Hong [3 ]
Li, Xiaorun [1 ,2 ]
Zhang, Fan [4 ]
Lee, Jane K. J. [1 ,2 ]
Li, Zihang [1 ,2 ]
Yu, Clinton [5 ]
Hu, Jason J. [1 ,2 ]
Zhao, Xiaojing [4 ]
Suematsu, Takuma [3 ]
Alvarez-Cabrera, Ana L. [1 ,2 ]
Liu, Qiushi [3 ]
Zhang, Liye [4 ,6 ]
Huang, Lan [5 ]
Aphasizheva, Inna [3 ]
Aphasizhev, Ruslan [3 ,7 ]
Zhou, Z. Hong [1 ,2 ]
机构
[1] Univ Calif Los Angeles, Dept Microbiol Immunol & Mol Genet, Los Angeles, CA 90095 USA
[2] Univ Calif Los Angeles, Calif Nanosyst Inst, Los Angeles, CA 90095 USA
[3] Boston Univ, Dept Mol & Cell Biol, Med Campus, Boston, MA 02215 USA
[4] ShanghaiTech Univ, Sch Life Sci & Technol, Shanghai, Peoples R China
[5] Univ Calif Irvine, Dept Physiol & Biophys, Irvine, CA USA
[6] Shanghai Clin Res & Trial Ctr, Shanghai 201210, Peoples R China
[7] Boston Univ, Dept Biochem, Med Campus, Boston, MA 02215 USA
关键词
GUIDE RNA; BINDING COMPLEX; KINETOPLASTID MITOCHONDRIA; PROTEIN; BRUCEI; TRANSCRIPTS; SPECIFICITY; DOMAIN; ENDONUCLEASE; PURIFICATION;
D O I
10.1126/science.adg4725
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
In Trypanosoma brucei, the editosome, composed of RNA-editing substrate-binding complex (RESC) and RNA-editing catalytic complex (RECC), orchestrates guide RNA (gRNA)-programmed editing to recode cryptic mitochondrial transcripts into messenger RNAs (mRNAs). The mechanism of information transfer from gRNA to mRNA is unclear owing to a lack of high-resolution structures for these complexes. With cryo-electron microscopy and functional studies, we have captured gRNA-stabilizing RESC-A and gRNA-mRNA-binding RESC-B and RESC-C particles. RESC-A sequesters gRNA termini, thus promoting hairpin formation and blocking mRNA access. The conversion of RESC-A into RESC-B or -C unfolds gRNA and allows mRNA selection. The ensuing gRNA-mRNA duplex protrudes from RESC-B, likely exposing editing sites to RECC-catalyzed cleavage, uridine insertion or deletion, and ligation. Our work reveals a remodeling event facilitating gRNA-mRNA hybridization and assembly of a macromolecular substrate for the editosome's catalytic modality.
引用
收藏
页码:43 / +
页数:11
相关论文
共 77 条
  • [1] PHENIX: a comprehensive Python']Python-based system for macromolecular structure solution
    Adams, Paul D.
    Afonine, Pavel V.
    Bunkoczi, Gabor
    Chen, Vincent B.
    Davis, Ian W.
    Echols, Nathaniel
    Headd, Jeffrey J.
    Hung, Li-Wei
    Kapral, Gary J.
    Grosse-Kunstleve, Ralf W.
    McCoy, Airlie J.
    Moriarty, Nigel W.
    Oeffner, Robert
    Read, Randy J.
    Richardson, David C.
    Richardson, Jane S.
    Terwilliger, Thomas C.
    Zwart, Peter H.
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2010, 66 : 213 - 221
  • [2] Architecture of the trypanosome RNA editing accessory complex, MRB1
    Ammerman, Michelle L.
    Downey, Kurtis M.
    Hashimi, Hassan
    Fisk, John C.
    Tomasello, Danielle L.
    Faktorova, Drahomira
    Kafkova, Lucie
    King, Tony
    Lukes, Julius
    Read, Laurie K.
    [J]. NUCLEIC ACIDS RESEARCH, 2012, 40 (12) : 5637 - 5650
  • [3] Comparison of ARM and HEAT protein repeats
    Andrade, MA
    Petosa, C
    O'Donoghue, SI
    Müller, CW
    Bork, P
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 2001, 309 (01) : 1 - 18
  • [4] A tale of two TUTases
    Aphasizhev, R
    Aphasizheva, I
    Simpson, L
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (19) : 10617 - 10622
  • [5] Isolation of a U-insertion/deletion editing complex from Leishmania tarentolae mitochondria
    Aphasizhev, R
    Aphasizheva, I
    Nelson, RE
    Gao, GH
    Simpson, AM
    Kang, XD
    Falick, AM
    Sbicego, S
    Simpson, L
    [J]. EMBO JOURNAL, 2003, 22 (04) : 913 - 924
  • [6] CTS tag-based methods for investigating mitochondrial RNA modification factors in Trypanosoma brucei
    Aphasizheva, Inna
    Suematsu, Takuma
    Vacas, Andres
    Wang, Hong
    Fan, Chenyu
    Zhao, Xiaojing
    Zhang, Liye
    Aphasizhev, Ruslan
    [J]. RNA MODIFICATION ENZYMES, 2021, 658 : 83 - 109
  • [7] Lexis and Grammar of Mitochondrial RNA Processing in Trypanosomes
    Aphasizheva, Inna
    Alfonzo, Juan
    Carnes, Jason
    Cestari, Igor
    Cruz-Reyes, Jorge
    Goeringer, H. Ulrich
    Hajduk, Stephen
    Lukes, Julius
    Madison-Antenucci, Susan
    Maslov, Dmitri A.
    McDermott, Suzanne M.
    Ochsenreiter, Torsten
    Read, Laurie K.
    Salavati, Reza
    Schnaufer, Achim
    Schneider, Andre
    Simpson, Larry
    Stuart, Kenneth
    Yurchenko, Vyacheslav
    Zhou, Z. Hong
    Zikova, Alena
    Zhang, Liye
    Zimmer, Sara
    Aphasizhev, Ruslan
    [J]. TRENDS IN PARASITOLOGY, 2020, 36 (04) : 337 - 355
  • [8] Investigating RNA editing factors from trypanosome mitochondria
    Aphasizheva, Inna
    Zhang, Liye
    Aphasizhev, Ruslan
    [J]. METHODS, 2016, 107 : 23 - 33
  • [9] RNA Binding and Core Complexes Constitute the U-Insertion/Deletion Editosome
    Aphasizheva, Inna
    Zhang, Liye
    Wang, Xiaorong
    Kaake, Robyn M.
    Huang, Lan
    Monti, Stefano
    Aphasizhev, Ruslan
    [J]. MOLECULAR AND CELLULAR BIOLOGY, 2014, 34 (23) : 4329 - 4342
  • [10] MAJOR TRANSCRIPT OF THE FRAMESHIFTED COXLL GENE FROM TRYPANOSOME MITOCHONDRIA CONTAINS 4 NUCLEOTIDES THAT ARE NOT ENCODED IN THE DNA
    BENNE, R
    VANDENBURG, J
    BRAKENHOFF, JPJ
    SLOOF, P
    VANBOOM, JH
    TROMP, MC
    [J]. CELL, 1986, 46 (06) : 819 - 826