Microbes as Communication & Decision-Making Networked Communities

被引:1
作者
Shaska, Joni [1 ]
Gursoy, Mustafa Can [2 ]
Ross, Tyler D. [3 ]
Cheng, Yu-Yu [4 ]
Krieger, Adam [5 ]
Thairu, Margaret [6 ]
Venturelli, Ophelia [4 ,7 ]
Boedicker, James [5 ]
Handelsman, Jo [6 ]
Mitra, Urbashi [2 ]
机构
[1] Univ southern Calif, Dept Elect & Comp Engn, Los Angeles, CA 90007 USA
[2] Univ southern Calif, Dept Elect & Comp Engn, Los Angeles, CA 90007 USA
[3] Univ Wisconsin madison, Dept Biomed Engn, Madison, WI 53706 USA
[4] Univ Wisconsin madison, Dept Biochem, Madison, WI 53706 USA
[5] Univ southern Calif, Dept Phys & astron, Los Angeles, CA 90007 USA
[6] Univ Wisconsin madison, Dept plant pathol, Madison, WI 53706 USA
[7] Univ Wisconsin madison, Dept Biomed Engn, Madison, WI 53706 USA
关键词
Microorganisms; Sensors; Repeaters; Relays; Production; Strain; Delays; Bacteria; decentralized detection; gene expression; heterogeneous species; microfluidics; molecular communications; quorum-sensing; DIFFUSIVE MOLECULAR COMMUNICATION; ESCHERICHIA-COLI; BACTERIAL; BIOLOGY; SYSTEMS; DESIGN;
D O I
10.1109/MNANO.2023.3262431
中图分类号
TB3 [工程材料学];
学科分类号
0805 ; 080502 ;
摘要
Despite the simplicity of an individual cell, microbial communities exhibit complex behavior and play significant roles in many biological phenomena. Understanding the communication within and between bacterial species can illuminate the how, as well as the why of numerous interactions that enable their collective behavior. In this position paper, we first discuss bacterial molecular communication in multihop settings. We address this concept in the context of local and global quorum sensing (QS) within a colony and then consider induced QS at a distance between different, spatially separated communities. We then investigate how the information is shared between cells when forming a quorum, particularly the intertwined relationship between cells' observations, actions, and the state of their surrounding environment. Lastly, we extend to multi-species systems where all species coexist and interact, leveraging concepts from multiple-input-multiple-output (MIMO) communications. Community robustness and resiliency is also explored.
引用
收藏
页码:32 / 41
页数:10
相关论文
共 44 条
[1]   The biomass distribution on Earth [J].
Bar-On, Yinon M. ;
Phillips, Rob ;
Milo, Ron .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2018, 115 (25) :6506-6511
[2]   Multiple feedback loop design in the tryptophan regulatory network of Escherichia coli suggests a paradigm for robust regulation of processes in series [J].
Bhartiya, Sharad ;
Chaudhary, Nikhil ;
Venkatesh, K. V. ;
Doyle, Francis J., III .
JOURNAL OF THE ROYAL SOCIETY INTERFACE, 2006, 3 (08) :383-391
[3]   Microbiome composition modulates secondary metabolism in a multispecies bacterial community [J].
Chevrette, Marc G. ;
Thomas, Chris S. ;
Hurley, Amanda ;
Rosario-Melendez, Natalia ;
Sankaran, Kris ;
Tu, Yixing ;
Hall, Austin ;
Magesh, Shruthi ;
Handelsman, Jo .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2022, 119 (42)
[4]   FEEDBACK-REGULATION OF RIBOSOMAL-RNA SYNTHESIS IN ESCHERICHIA-COLI - REQUIREMENT FOR INITIATION-FACTOR IF2 [J].
COLE, JR ;
OLSSON, CL ;
HERSHEY, JWB ;
GRUNBERGMANAGO, M ;
NOMURA, M .
JOURNAL OF MOLECULAR BIOLOGY, 1987, 198 (03) :383-392
[5]   Analysis of Pseudomonas aeruginosa biofilm membrane vesicles supports multiple mechanisms of biogenesis [J].
Cooke, Adam C. ;
Nello, Alexander V. ;
Ernst, Robert K. ;
Schertzer, Jeffrey W. .
PLOS ONE, 2019, 14 (02)
[6]   The essential activities of the bacterial sigma factor [J].
Davis, Maria C. ;
Kesthely, Christopher A. ;
Franklin, Emily A. ;
MacLellan, Shawn R. .
CANADIAN JOURNAL OF MICROBIOLOGY, 2017, 63 (02) :89-99
[7]  
Desoer C. A., 1953, THESIS MIT CAMBRIDGE
[8]   Design and Analysis of Wireless Communication Systems Using Diffusion-Based Molecular Communication Among Bacteria [J].
Einolghozati, Arash ;
Sardari, Mohsen ;
Fekri, Faramarz .
IEEE TRANSACTIONS ON WIRELESS COMMUNICATIONS, 2013, 12 (12) :6096-6105
[9]   BACTERIAL BIOLUMINESCENCE - ISOLATION AND GENETIC-ANALYSIS OF FUNCTIONS FROM VIBRIO FISCHERI [J].
ENGEBRECHT, J ;
NEALSON, K ;
SILVERMAN, M .
CELL, 1983, 32 (03) :773-781
[10]   Molecular biology of the symbiotic pathogenic bacteria Xenorhabdus spp and Photorhabdus spp [J].
Forst, S ;
Nealson, K .
MICROBIOLOGICAL REVIEWS, 1996, 60 (01) :21-&