A novel immunogenomic classification for prognosis in non-small cell lung cancer

被引:1
作者
Tang, Shu [1 ]
Xu, Liqing [1 ]
Wu, Zhanshen [1 ]
Wen, Qiang [2 ]
Li, Hui [1 ]
Li, Na [1 ]
机构
[1] Zhengzhou Univ, Affiliated Hosp 1, Dept Pharm, 1 East Construct Rd, Zhengzhou 450052, Peoples R China
[2] Zhengzhou Univ, Inst Clin Pharmacol, Zhengzhou 450052, Peoples R China
基金
中国国家自然科学基金;
关键词
NSCLC; ssGSEA; Immunogenomic classification; Prognostic model; Immune cell infiltration; MHC CLASS-I; IMMUNOSURVEILLANCE; PROGRESSION; EXPRESSION; RISK;
D O I
10.1007/s00432-023-04887-9
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
ObjectiveTo facilitate immunotherapy and prognostic assessment of non-small cell lung cancer (NSCLC), we established a novel immunogenomic classification to provide valid identification criteria.MethodsThe immune enrichment scores were calculated by single sample gene set enrichment analysis(ssGSEA) and clustered into Immunity_L and Immunity_H, and the reliability of this classification wasdemonstrated. Immune microenvironment score and immune cell infiltration analysis of NSCLC were alsoperformed. Randomly divided into training group and test group, a prognosis-related immune profile was developedusing least absolute shrinkage and selection operator (LASSO) and stepwise COX proportional hazards model toconstruct a prognostic mode.ResultsThe risk score for this immune profile was identified as an independent prognostic factor and can be used as a powerful prognostic tool to refine tumor immunotherapy. Our study identified two NSCLC classifications based on immunomic profiling, Immunity_H and Immunity_L.ConclusionIn conclusion, Immunogenomic classification can distinguish the immune status of different types of NSCLC patients and contribute to the immunotherapy of NSCLC patients.
引用
收藏
页码:10951 / 10964
页数:14
相关论文
共 37 条
  • [1] Prognostic effect of epithelial and stromal lymphocyte infiltration in non-small cell lung cancer
    Al-Shibli, Khalid I.
    Donnem, Tom
    Al-Saad, Samer
    Persson, Magnus
    Bremnes, Roy M.
    Busund, Lill-Tove
    [J]. CLINICAL CANCER RESEARCH, 2008, 14 (16) : 5220 - 5227
  • [2] The cellular pathway of CD1e in immature and maturing dendritic cells
    Angénieux, C
    Fraisier, V
    Maître, B
    Racine, V
    van der Wel, N
    Fricker, D
    Proamer, F
    Sachse, M
    Cazenave, JP
    Peters, P
    Goud, B
    Hanau, D
    Sibarita, JB
    Salamero, J
    de la Salle, H
    [J]. TRAFFIC, 2005, 6 (04) : 286 - 302
  • [3] Reorganizing the protein space at the Universal Protein Resource (UniProt)
    Apweiler, Rolf
    Martin, Maria Jesus
    O'Donovan, Claire
    Magrane, Michele
    Alam-Faruque, Yasmin
    Antunes, Ricardo
    Casanova, Elisabet Barrera
    Bely, Benoit
    Bingley, Mark
    Bower, Lawrence
    Bursteinas, Borisas
    Chan, Wei Mun
    Chavali, Gayatri
    Da Silva, Alan
    Dimmer, Emily
    Eberhardt, Ruth
    Fazzini, Francesco
    Fedotov, Alexander
    Garavelli, John
    Castro, Leyla Garcia
    Gardner, Michael
    Hieta, Reija
    Huntley, Rachael
    Jacobsen, Julius
    Legge, Duncan
    Liu, Wudong
    Luo, Jie
    Orchard, Sandra
    Patient, Samuel
    Pichler, Klemens
    Poggioli, Diego
    Pontikos, Nikolas
    Pundir, Sangya
    Rosanoff, Steven
    Sawford, Tony
    Sehra, Harminder
    Turner, Edward
    Wardell, Tony
    Watkins, Xavier
    Corbett, Matt
    Donnelly, Mike
    van Rensburg, Pieter
    Goujon, Mickael
    McWilliam, Hamish
    Lopez, Rodrigo
    Xenarios, Ioannis
    Bougueleret, Lydie
    Bridge, Alan
    Poux, Sylvain
    Redaschi, Nicole
    [J]. NUCLEIC ACIDS RESEARCH, 2012, 40 (D1) : D71 - D75
  • [4] Widespread parainflammation in human cancer
    Aran, Dvir
    Lasry, Audrey
    Zinger, Adar
    Biton, Moshe
    Pikarsky, Eli
    Hellman, Asaf
    Butte, Atul J.
    Ben-Neriah, Yinon
    [J]. GENOME BIOLOGY, 2016, 17
  • [5] The Role of Tumor-Infiltrating Immune Cells and Chronic Inflammation at the Tumor Site on Cancer Development, Progression, and Prognosis Emphasis on Non-small Cell Lung Cancer
    Bremnes, Roy M.
    Al-Shibli, Khalid
    Donnem, Tom
    Sirera, Rafael
    Al-Saad, Samer
    Andersen, Sigve
    Stenvold, Helge
    Camps, Carlos
    Busund, Lill-Tove
    [J]. JOURNAL OF THORACIC ONCOLOGY, 2011, 6 (04) : 824 - 833
  • [6] Comparing and contrasting predictive biomarkers for immunotherapy and targeted therapy of NSCLC
    Camidge, D. Ross
    Doebele, Robert C.
    Kerr, Keith M.
    [J]. NATURE REVIEWS CLINICAL ONCOLOGY, 2019, 16 (06) : 341 - 355
  • [7] Chen T, 2020, EUR REV MED PHARMACO, V24, P3734, DOI 10.26355/eurrev_202004_20837
  • [8] Spatial Analysis and Clinical Significance of HLA Class-I and Class-II Subunit Expression in Non-Small Cell Lung Cancer
    Datar, Ila J.
    Hauc, Sacha C.
    Desai, Shruti
    Gianino, Nicole
    Henick, Brian
    Liu, Yuting
    Syrigos, Kostas
    Rimm, David L.
    Kavathas, Paula
    Ferrone, Soldano
    Schalper, Kurt A.
    [J]. CLINICAL CANCER RESEARCH, 2021, 27 (10) : 2837 - 2847
  • [9] Cancer immunoediting: from immunosurveillance to tumor escape
    Dunn, GP
    Bruce, AT
    Ikeda, H
    Old, LJ
    Schreiber, RD
    [J]. NATURE IMMUNOLOGY, 2002, 3 (11) : 991 - 998
  • [10] Differential binding affinity of mutated peptides for MHC class I is a predictor of survival in advanced lung cancer and melanoma
    Ghorani, E.
    Rosenthal, R.
    McGranahan, N.
    Reading, J. L.
    Lynch, M.
    Peggs, K. S.
    Swanton, C.
    Quezada, S. A.
    [J]. ANNALS OF ONCOLOGY, 2018, 29 (01) : 271 - 279