Absolute quantification of protein number and dynamics in single cells

被引:1
作者
Royer, Catherine A. [1 ]
Tyers, Mike [2 ,3 ]
Tollis, Sylvain [4 ]
机构
[1] Rensselaer Polytech Inst, Dept Biol Sci, Troy, NY 12180 USA
[2] Hosp Sick Children, Peter Gilgan Ctr Res & Learning, Translat Med Program, Toronto, ON M5G 0A4, Canada
[3] Univ Toronto, Dept Mol Genet, Toronto, ON M5S 1A8, Canada
[4] Univ Eastern Finland, Inst Biomed, Kuopio 70210, Finland
基金
芬兰科学院; 加拿大健康研究院; 美国国家科学基金会;
关键词
FLUORESCENCE CORRELATION SPECTROSCOPY; OPTICAL RECONSTRUCTION MICROSCOPY; AUTOFLUORESCENCE; COMPLEXES; STOICHIOMETRY; BRIGHTNESS; MECHANISMS; EXPRESSION; MOLECULES; TISSUE;
D O I
10.1016/j.sbi.2023.102673
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Quantitative characterization of protein abundance and interactions in live cells is necessary to understand and predict cellular behavior. The accurate determination of copy number for individual proteins and heterologous complexes in individual cells is critical because small changes in protein dosage, often less than two-fold, can have strong phenotypic consequences. Here, we review the merits and pitfalls of different quantitative fluorescence imaging methods for single-cell determination of protein abundance, localization, interactions, and dynamics. In particular, we discuss how scanning number and brightness (sN & B) and its variation, Raster scanning image correlation spectroscopy (RICS), exploit stochastic noise in small measurement volumes to quantify protein abundance, stoichiometry, and dynamics with high accuracy.
引用
收藏
页数:8
相关论文
共 66 条
[31]   Reconciling molecular regulatory mechanisms with noise patterns of bacterial metabolic promoters in induced and repressed states [J].
Ferguson, Matthew L. ;
Le Coq, Dominique ;
Jules, Matthieu ;
Aymerich, Stephane ;
Radulescu, Ovidiu ;
Declerck, Nathalie ;
Royer, Catherine A. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2012, 109 (01) :155-160
[32]   Absolute quantification of gene expression in individual bacterial cells using two-photon fluctuation microscopy [J].
Ferguson, Matthew L. ;
Le Coq, Dominique ;
Jules, Matthieu ;
Aymerich, Stephane ;
Declerck, Nathalie ;
Royer, Catherine A. .
ANALYTICAL BIOCHEMISTRY, 2011, 419 (02) :250-259
[33]   Fluorescence correlation spectroscopy of molecular motions and kinetics [J].
Gösch, M ;
Rigler, R .
ADVANCED DRUG DELIVERY REVIEWS, 2005, 57 (01) :169-190
[34]   A part toolbox to tune genetic expression in Bacillus subtilis [J].
Guiziou, Sarah ;
Sauveplane, Vincent ;
Chang, Hung-Ju ;
Clerte, Caroline ;
Declerck, Nathalie ;
Jules, Matthieu ;
Bonnet, Jerome .
NUCLEIC ACIDS RESEARCH, 2016, 44 (15) :7495-7508
[35]   Recovering mixtures of fast-diffusing states from short single-particle trajectories [J].
Heckert, Alec ;
Dahal, Liza ;
Tijan, Robert ;
Darzacq, Xavier .
ELIFE, 2022, 11
[36]   Arbitrary-Region Raster Image Correlation Spectroscopy [J].
Hendrix, Jelle ;
Dekens, Tomas ;
Schrimpf, Waldemar ;
Lamb, Don C. .
BIOPHYSICAL JOURNAL, 2016, 111 (08) :1785-1796
[37]   Breaking the Diffraction Barrier: Super-Resolution Imaging of Cells [J].
Huang, Bo ;
Babcock, Hazen ;
Zhuang, Xiaowei .
CELL, 2010, 143 (07) :1047-1058
[38]   Photobleaching step analysis for robust determination of protein complex stoichiometries [J].
Hummert, Johan ;
Yserentant, Klaus ;
Fink, Theresa ;
Euchner, Jonas ;
Ho, Yin Xin ;
Tashev, Stanimir Asenov ;
Herten, Dirk-Peter .
MOLECULAR BIOLOGY OF THE CELL, 2021, 32 (21)
[39]   Correction of multiple-blinking artifacts in photoactivated localization microscopy [J].
Jensen, Louis G. ;
Hoh, Tjun Yee ;
Williamson, David J. ;
Griffie, Juliette ;
Sage, Daniel ;
Rubin-Delanchy, Patrick ;
Owen, Dylan M. .
NATURE METHODS, 2022, 19 (05) :594-+
[40]   Mechanisms of ephrin-Eph signalling in development, physiology and disease [J].
Kania, Artur ;
Klein, Ruediger .
NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2016, 17 (04) :240-256