An Updated Trial Sequential Meta-analysis of Vitamin D Receptor Gene Polymorphism (Fok1, Bsm1, Taq1 and Apa1) and Risk to Tuberculosis

被引:6
作者
Shah, Srishti [1 ]
Priyanka [2 ]
Sharma, Sadhna [2 ,3 ]
机构
[1] Natl Inst Sci Educ & Res, Bhubaneswar, India
[2] Univ Delhi, Dept Zool, DS Kothari Cent Facil Interdisciplinary Res DSKC, Miranda House, Delhi 110007, India
[3] Univ Delhi, Dept Zool, Miranda House, Delhi 110007, India
关键词
Tuberculosis; Single nucleotide polymorphism (SNP); Vitamin D receptor (VDR); Meta-analysis; Trial sequential analysis; PULMONARY TUBERCULOSIS; MYCOBACTERIUM-TUBERCULOSIS; SUSCEPTIBILITY; VDR; ASSOCIATION; SECRETION; GROWTH; CELL;
D O I
10.1007/s12291-022-01091-3
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Vitamin D receptor (VDR) is one of the most widely studied genes for the Tuberculosis (TB) susceptibility. Several studies have been conducted to establish some association between them but most of the time they are contradictory and underpowered. So, a trial sequential meta-analysis between VDR gene polymorphisms and TB susceptibility can provide a better understanding of the relationship. A meta-analysis was carried out using a total of 17 case-control studies which includes Fok1 (14 Studies), Bsm1 (8 Studies), Apa1 (8 Studies) and Taq1 (12 Studies) polymorphisms in the VDR gene searched from Pubmed and Google Scholar. Pooled Odds Ratio (OR) and 95% Confidence Interval (CI) were calculated using StatsDirect Version 3, using random effects model. Trial sequential analysis (TSA) was also performed to assess if the statistical significance of the meta-analysis was within monitoring boundaries. It was found that the individuals with BB genotype of Bsm1 polymorphism with OR = 0.713 (95%CI = 0.521, 0.974; p value < 0.05) and FF genotype of Fok1 polymorphism with pooled OR = 0.716 (95%CI = 0.523, 0.979; p value < 0.05) had decreased incidence of TB. Also, the aa genotype of Apa1 gene polymorphism increases susceptibility to TB with pooled OR = 1.997 (95%CI = 1.121, 3.558; p value < 0.05). All these analyses reached the required information size through TSA analysis. No statistically significant result was found for Taq1 polymorphisms and TB susceptibility. VDR polymorphisms in Fok1 and Bsm1 played protective roles against development of TB infection, while Apa1 appeared to have a significant association to TB susceptibility.
引用
收藏
页码:60 / 72
页数:13
相关论文
共 50 条
[21]   Role of vitamin D receptor gene Cdx2 and Apa1 polymorphisms in prostate cancer susceptibility: a meta-analysis [J].
Wang, Kewei ;
Wu, Guosheng ;
Li, Jinping ;
Song, Wentao .
BMC CANCER, 2016, 16
[22]   Vitamin D receptor Fok1 polymorphism and invasive ovarian carcinoma risk - A case-control study [J].
Arumugam, Meenakshi ;
Sonkusare, Shipra ;
Goripalli, Shreeja ;
Shivappa, Pooja ;
Shetty, Prashanth ;
Kumari, Suchetha N. .
GENE, 2021, 768
[23]   1,25-Dihydroxyvitamin D and the Vitamin D Receptor Gene Polymorphism Apa1 Influence Bone Mineral Density in Primary Hyperparathyroidism [J].
Christensen, Monika H. E. ;
Apalset, Ellen M. ;
Nordbo, Yngve ;
Varhaug, Jan Erik ;
Mellgren, Gunnar ;
Lien, Ernst A. .
PLOS ONE, 2013, 8 (02)
[24]   Vitamin D Receptor Gene FokI Polymorphism Contributes to Increasing the Risk of Tuberculosis An Update Meta-Analysis [J].
Huang, Liling ;
Liu, Cunxu ;
Liao, Guangfu ;
Yang, Xiaobing ;
Tang, Xiuwen ;
Chen, Jingjie .
MEDICINE, 2015, 94 (51)
[25]   A meta-analysis suggests the association of reduced serum level of vitamin D and T-allele of Fok1 (rs2228570) polymorphism in the vitamin D receptor gene with celiac disease [J].
Shree, Tanya ;
Banerjee, Pratibha ;
Senapati, Sabyasachi .
FRONTIERS IN NUTRITION, 2023, 9
[26]   A meta-analysis of association of vitamin D receptor BsmI gene polymorphism with the risk of type 1 diabetes mellitus [J].
Qin, Wei-Hong ;
Wang, Han-Xiao ;
Qiu, Jun-Lin ;
Huang, Xue-Bin ;
Huang, Yan ;
Wu, Nian-Rong ;
Liang, Hua-Sheng .
JOURNAL OF RECEPTORS AND SIGNAL TRANSDUCTION, 2014, 34 (05) :372-377
[27]   Association of N-acetyltransferase 1 polymorphism and bladder cancer risk: an updated meta-analysis and trial sequential analysis [J].
Xu, Zicheng ;
Li, Xiao ;
Qin, Zhiqiang ;
Xue, Jianxin ;
Wang, Jingyuan ;
Liu, Zhentao ;
Cai, Hongzhou ;
Yu, Bin ;
Xu, Ting ;
Zou, Qin .
INTERNATIONAL JOURNAL OF BIOLOGICAL MARKERS, 2017, 32 (03) :E297-E304
[28]   Relationship of HLA-DRB1 gene polymorphism with susceptibility to pulmonary tuberculosis: updated meta-analysis [J].
Li, C-P. ;
Zhou, Y. ;
Xiang, X. ;
Zhou, Y. ;
He, M. .
INTERNATIONAL JOURNAL OF TUBERCULOSIS AND LUNG DISEASE, 2015, 19 (07) :841-849
[29]   Vitamin D receptor gene polymorphisms and the risk of the type 1 diabetes: a meta-regression and updated meta-analysis [J].
Na Zhai ;
Ramtin Bidares ;
Masoud Hassanzadeh Makoui ;
Saeed Aslani ;
Payam Mohammadi ;
Bahman Razi ;
Danyal Imani ;
Mohammad Yazdchi ;
Haleh Mikaeili .
BMC Endocrine Disorders, 20
[30]   Polymorphisms in the vitamin D receptor gene and type 1 diabetes mellitus risk: An update by meta-analysis [J].
Zhang, Jie ;
Li, Wei ;
Liu, Jiaming ;
Wu, Wenhe ;
Ouyang, Houxian ;
Zhang, Qingqing ;
Wang, Yue ;
Liu, Libin ;
Yang, Rongrong ;
Liu, Xiaoting ;
Meng, Qinghe ;
Lu, Jianxin .
MOLECULAR AND CELLULAR ENDOCRINOLOGY, 2012, 355 (01) :135-142