SELF-SUPERVISED LEARNING GUIDED TRANSFORMER FOR SURVIVAL PREDICTION OF LUNG CANCER USING PATHOLOGICAL IMAGES

被引:0
作者
Zhao, Lu [1 ]
Hou, Runping [1 ,3 ]
Zhao, Wangyuan [1 ]
Qiu, Lu [1 ]
Teng, Haohua [2 ]
Han, Yuchen [2 ]
Fu, Xiaolong [3 ]
Zhao, Jun [1 ]
机构
[1] Shanghai Jiao Tong Univ, Sch Biomed Engn, Shanghai, Peoples R China
[2] Shanghai Chest Hosp, Dept Pathol, Shanghai, Peoples R China
[3] Shanghai Chest Hosp, Dept Radiat Oncol, Shanghai, Peoples R China
来源
2023 IEEE 20TH INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING, ISBI | 2023年
基金
国家重点研发计划; 中国国家自然科学基金;
关键词
Lung cancer; whole slide images; survival prediction; transformer; self-supervised learning; MANAGEMENT;
D O I
10.1109/ISBI53787.2023.10230825
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
Accurate overall survival (OS) prediction for lung cancer patients is of great significance, and the histopathology slides are considered the gold standard for cancer diagnosis and prognosis. However, the current methods usually lack extracting effective features and ignore the utilization of spatial information. To address these challenges, we propose a self-supervised learning guided transformer framework (SET) for OS prediction with whole slide images (WSIs). We introduce self-supervised learning to exploit the characteristics of pathological images and thus capture domain-specific contextual representations. Furthermore, we design a dualstream position embedding architecture to facilitate aggregating global spatial information. The experimental results on the lung cancer dataset of stage III-N2 demonstrate that our proposed algorithm can achieve a better concordance index compared with state-of-the-art methods. Moreover, the proposed method can significantly divide patients into high-risk group and low-risk group to assist the personalized treatment.
引用
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页数:5
相关论文
共 15 条
  • [1] Clinical-grade computational pathology using weakly supervised deep learning on whole slide images
    Campanella, Gabriele
    Hanna, Matthew G.
    Geneslaw, Luke
    Miraflor, Allen
    Silva, Vitor Werneck Krauss
    Busam, Klaus J.
    Brogi, Edi
    Reuter, Victor E.
    Klimstra, David S.
    Fuchs, Thomas J.
    [J]. NATURE MEDICINE, 2019, 25 (08) : 1301 - +
  • [2] Whole Slide Images are 2D Point Clouds: Context-Aware Survival Prediction Using Patch-Based Graph Convolutional Networks
    Chen, Richard J.
    Lu, Ming Y.
    Shaban, Muhammad
    Chen, Chengkuan
    Chen, Tiffany Y.
    Williamson, Drew F. K.
    Mahmood, Faisal
    [J]. MEDICAL IMAGE COMPUTING AND COMPUTER ASSISTED INTERVENTION - MICCAI 2021, PT VIII, 2021, 12908 : 339 - 349
  • [3] Chen Ting, 2019, 25 AMERICAS C INFORM
  • [4] Exploring Simple Siamese Representation Learning
    Chen, Xinlei
    He, Kaiming
    [J]. 2021 IEEE/CVF CONFERENCE ON COMPUTER VISION AND PATTERN RECOGNITION, CVPR 2021, 2021, : 15745 - 15753
  • [5] The biology and management of non-small cell lung cancer
    Herbst, Roy S.
    Morgensztern, Daniel
    Boshoff, Chris
    [J]. NATURE, 2018, 553 (7689) : 446 - 454
  • [6] Integration of Patch Features Through Self-supervised Learning and Transformer for Survival Analysis on Whole Slide Images
    Huang, Ziwang
    Chai, Hua
    Wang, Ruoqi
    Wang, Haitao
    Yang, Yuedong
    Wu, Hejun
    [J]. MEDICAL IMAGE COMPUTING AND COMPUTER ASSISTED INTERVENTION - MICCAI 2021, PT VIII, 2021, 12908 : 561 - 570
  • [7] Ilse M, 2018, PR MACH LEARN RES, V80
  • [8] Graph CNN for Survival Analysis on Whole Slide Pathological Images
    Li, Ruoyu
    Yao, Jiawen
    Zhu, Xinliang
    Li, Yeqing
    Huang, Junzhou
    [J]. MEDICAL IMAGE COMPUTING AND COMPUTER ASSISTED INTERVENTION - MICCAI 2018, PT II, 2018, 11071 : 174 - 182
  • [9] Optimizing Survival Analysis of XGBoost for Ties to Predict Disease Progression of Breast Cancer
    Liu, Pei
    Fu, Bo
    Yang, Simon X.
    Deng, Ling
    Zhong, Xiaorong
    Zheng, Hong
    [J]. IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING, 2021, 68 (01) : 148 - 160
  • [10] Shao ZC, 2021, ADV NEUR IN