GENOME-WIDE IDENTIFICATION OF TCP TRANSCRIPTION FACTORS FAMILY IN POPULUS SECT. TURANGA (POPULUS PRUINOSA SCHRENK AND POPULUS EUPHRATICA OLIVE) REVEALED THE ROLES OF TCPS IN LEAF MORPHOLOGY

被引:0
作者
Wang, J. N. [1 ,2 ]
Xu, J. D. [4 ]
Sun, J. H. [1 ,2 ,3 ]
Qiu, C. [1 ,2 ,3 ]
Wu, Z. H. [2 ,5 ]
LI, Z. J. [1 ,2 ,3 ]
机构
[1] Tarim Univ, Coll Plant Sci, Alar 843300, Peoples R China
[2] Xinjiang Prod & Construct Grp, Key Lab Biol Resource Protect & Utilizat Tarim Bas, Alar 843300, Peoples R China
[3] Tarim Univ, Desert Poplar Res Ctr, Alar 843300, Peoples R China
[4] South Cent Univ Nationalities, Coll Life Sci, Hubei Prov Key Lab Protect & Applicat Special Plan, Wuhan 430040, Peoples R China
[5] Zhejiang Normal Univ, Coll Life Sci, Jinhua 321004, Zhejiang, Peoples R China
来源
APPLIED ECOLOGY AND ENVIRONMENTAL RESEARCH | 2023年 / 21卷 / 02期
关键词
desert poplar species; phylogenetic analysis; TCP gene family; heteromorphic leaves; PLANT-GROWTH; EXPRESSION; LEAVES; DIFFERENTIATION; BIOSYNTHESIS; RESPONSES; HISAT;
D O I
10.15666/aeer/2102_16651696
中图分类号
Q14 [生态学(生物生态学)];
学科分类号
071012 ; 0713 ;
摘要
The TCP (TEOSINTE BRANCHED1/CYCLOIDEA/PROLIFERATING CELL FACTORS) gene family is a plant-specific transcription factor family and plays an important regulatory role in plant growth and development. However, the identification, characterization, and expression levels of TCPs during leaf development in Populus pruinosa and Populus euphratica remain unclear. In this study, 33 and 34 non-redundant TCPs in P. pruinosa and P. euphratica, (PpTCPs/PeTCPs) are identified, respectively, which contain TCP-conserved domains and are unevenly distributed on 19 chromosomes. Among them, PpTCP19, PpTCP27, PeTCP19, and PeTCP28 undergo positive selection in the Populus sect. Turanga. Furthermore, transcriptome data on different leaf morphologies of P. pruinosa/P. euphratica and available functional data of TCPs in Arabidopsis thaliana (AtTCP) support the involvement of the TCP gene family in the leaf development of the Populus sect. Turanga. PpTCP7, PpTCP19, PeTCP7, and PeTCP19 may regulate leaf morphology by restricting cell division at the boundaries of leaves and sepals in P. pruinosa and P. euphratica, respectively. These results elucidate a foundation for an in-depth analysis of the correlation between the expression pattern of the TCP gene and leaf morphology changes in the Populus sect. Turanga, and provide valuable information for the functional of TCP factors in the sect.
引用
收藏
页码:1665 / 1696
页数:32
相关论文
共 54 条
[21]   TCP Transcription Factors Regulate the Activities of ASYMMETRIC LEAVES1 and miR164, as Well as the Auxin Response, during Differentiation of Leaves in Arabidopsis [J].
Koyama, Tomotsugu ;
Mitsuda, Nobutaka ;
Seki, Motoaki ;
Shinozaki, Kazuo ;
Ohme-Takagi, Masaru .
PLANT CELL, 2010, 22 (11) :3574-3588
[22]   Arabidopsis TCP20 links regulation of growth and cell division control pathways [J].
Li, CX ;
Potuschak, T ;
Colón-Carmona, A ;
Gutiérrez, RA ;
Doerner, P .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (36) :12978-12983
[23]   Genome-Wide Identification and Characterization of TCP Gene Family Members in Melastoma candidum [J].
Li, Hui ;
Wen, Xiaoxia ;
Huang, Xiong ;
Wei, Mingke ;
Chen, Hongpeng ;
Yu, Yixun ;
Dai, Seping .
MOLECULES, 2022, 27 (24)
[24]   Genome-wide identification and characterization of TCP genes involved in ovule development of Phalaenopsis equestris [J].
Lin, Yu-Fu ;
Chen, You-Yi ;
Hsiao, Yu-Yun ;
Shen, Ching-Yu ;
Hsu, Jui-Ling ;
Yeh, Chuan-Ming ;
Mitsuda, Nobutaka ;
Ohme-Takagi, Masaru ;
Liu, Zhong-Jian ;
Tsai, Wen-Chieh .
JOURNAL OF EXPERIMENTAL BOTANY, 2016, 67 (17) :5051-5066
[25]  
Liu S, 2016, STUDY ARID AREAS, V33, P6
[26]   Origin of floral asymmetry in Antirrhinum [J].
Luo, D ;
Carpenter, R ;
Vincent, C ;
Copsey, L ;
Coen, E .
NATURE, 1996, 383 (6603) :794-799
[27]   TCP genes: a family snapshot ten years later [J].
Martin-Trillo, Mar ;
Cubas, Pilar .
TRENDS IN PLANT SCIENCE, 2010, 15 (01) :31-39
[28]   miR319a targeting of TCP4 is critical for petal growth and development in Arabidopsis [J].
Nag, Anwesha ;
King, Stacey ;
Jack, Thomas .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (52) :22534-22539
[29]   Control of leaf morphogenesis by microRNAs [J].
Palatnik, JF ;
Allen, E ;
Wu, XL ;
Schommer, C ;
Schwab, R ;
Carrington, JC ;
Weigel, D .
NATURE, 2003, 425 (6955) :257-263
[30]   Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown [J].
Pertea, Mihaela ;
Kim, Daehwan ;
Pertea, Geo M. ;
Leek, Jeffrey T. ;
Salzberg, Steven L. .
NATURE PROTOCOLS, 2016, 11 (09) :1650-1667