GENOME-WIDE IDENTIFICATION OF TCP TRANSCRIPTION FACTORS FAMILY IN POPULUS SECT. TURANGA (POPULUS PRUINOSA SCHRENK AND POPULUS EUPHRATICA OLIVE) REVEALED THE ROLES OF TCPS IN LEAF MORPHOLOGY

被引:0
作者
Wang, J. N. [1 ,2 ]
Xu, J. D. [4 ]
Sun, J. H. [1 ,2 ,3 ]
Qiu, C. [1 ,2 ,3 ]
Wu, Z. H. [2 ,5 ]
LI, Z. J. [1 ,2 ,3 ]
机构
[1] Tarim Univ, Coll Plant Sci, Alar 843300, Peoples R China
[2] Xinjiang Prod & Construct Grp, Key Lab Biol Resource Protect & Utilizat Tarim Bas, Alar 843300, Peoples R China
[3] Tarim Univ, Desert Poplar Res Ctr, Alar 843300, Peoples R China
[4] South Cent Univ Nationalities, Coll Life Sci, Hubei Prov Key Lab Protect & Applicat Special Plan, Wuhan 430040, Peoples R China
[5] Zhejiang Normal Univ, Coll Life Sci, Jinhua 321004, Zhejiang, Peoples R China
来源
APPLIED ECOLOGY AND ENVIRONMENTAL RESEARCH | 2023年 / 21卷 / 02期
关键词
desert poplar species; phylogenetic analysis; TCP gene family; heteromorphic leaves; PLANT-GROWTH; EXPRESSION; LEAVES; DIFFERENTIATION; BIOSYNTHESIS; RESPONSES; HISAT;
D O I
10.15666/aeer/2102_16651696
中图分类号
Q14 [生态学(生物生态学)];
学科分类号
071012 ; 0713 ;
摘要
The TCP (TEOSINTE BRANCHED1/CYCLOIDEA/PROLIFERATING CELL FACTORS) gene family is a plant-specific transcription factor family and plays an important regulatory role in plant growth and development. However, the identification, characterization, and expression levels of TCPs during leaf development in Populus pruinosa and Populus euphratica remain unclear. In this study, 33 and 34 non-redundant TCPs in P. pruinosa and P. euphratica, (PpTCPs/PeTCPs) are identified, respectively, which contain TCP-conserved domains and are unevenly distributed on 19 chromosomes. Among them, PpTCP19, PpTCP27, PeTCP19, and PeTCP28 undergo positive selection in the Populus sect. Turanga. Furthermore, transcriptome data on different leaf morphologies of P. pruinosa/P. euphratica and available functional data of TCPs in Arabidopsis thaliana (AtTCP) support the involvement of the TCP gene family in the leaf development of the Populus sect. Turanga. PpTCP7, PpTCP19, PeTCP7, and PeTCP19 may regulate leaf morphology by restricting cell division at the boundaries of leaves and sepals in P. pruinosa and P. euphratica, respectively. These results elucidate a foundation for an in-depth analysis of the correlation between the expression pattern of the TCP gene and leaf morphology changes in the Populus sect. Turanga, and provide valuable information for the functional of TCP factors in the sect.
引用
收藏
页码:1665 / 1696
页数:32
相关论文
共 54 条
[1]   Alterations of plant architecture and phase transition by the phytoplasma virulence factor SAP11 [J].
Chang, Shu Heng ;
Tan, Choon Meng ;
Wu, Chih-Tang ;
Lin, Tzu-Hsiang ;
Jiang, Shin-Ying ;
Liu, Ren-Ci ;
Tsai, Ming-Chen ;
Su, Li-Wen ;
Yang, Jun-Yi .
JOURNAL OF EXPERIMENTAL BOTANY, 2018, 69 (22) :5389-5401
[2]   TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data [J].
Chen, Chengjie ;
Chen, Hao ;
Zhang, Yi ;
Thomas, Hannah R. ;
Frank, Margaret H. ;
He, Yehua ;
Xia, Rui .
MOLECULAR PLANT, 2020, 13 (08) :1194-1202
[3]   Genome-wide analysis of TCP family in tobacco [J].
Chen, L. ;
Chen, Y. Q. ;
Ding, A. M. ;
Chen, H. ;
Xia, F. ;
Wang, W. F. ;
Sun, Y. H. .
GENETICS AND MOLECULAR RESEARCH, 2016, 15 (02)
[4]   SOAPnuke: a MapReduce acceleration-supported software for integrated quality control and preprocessing of high-throughput sequencing data [J].
Chen, Yuxin ;
Chen, Yongsheng ;
Shi, Chunmei ;
Huang, Zhibo ;
Zhang, Yong ;
Li, Shengkang ;
Li, Yan ;
Ye, Jia ;
Yu, Chang ;
Li, Zhuo ;
Zhang, Xiuqing ;
Wang, Jian ;
Yang, Huanming ;
Fang, Lin ;
Chen, Qiang .
GIGASCIENCE, 2017, 7 (01) :1-6
[5]   The TCP domain: a motif found in proteins regulating plant growth and development [J].
Cubas, P ;
Lauter, N ;
Doebley, J ;
Coen, E .
PLANT JOURNAL, 1999, 18 (02) :215-222
[6]   The evolution of apical dominance in maize [J].
Doebley, J ;
Stec, A ;
Hubbard, L .
NATURE, 1997, 386 (6624) :485-488
[7]  
Duvaud S., 2021, NUCLEIC ACIDS RES, V49, pW216, DOI [DOI 10.1093/nar/gkab225, 10.1093/nar/gkab225]
[8]   Phylogeography Reveals Geographic and Environmental Factors Driving Genetic Differentiation of Populus sect. Turanga in Northwest China [J].
Gai, Zhongshuai ;
Zhai, Juntuan ;
Chen, Xiangxiang ;
Jiao, Peipei ;
Zhang, Shanhe ;
Sun, Jianhao ;
Qin, Rui ;
Liu, Hong ;
Wu, Zhihua ;
Li, Zhijun .
FRONTIERS IN PLANT SCIENCE, 2021, 12
[9]   Reciprocal grafting separates the roles of the root and shoot in sex-related drought responses in Populus cathayana males and females [J].
Han, Ying ;
Wang, Yuhua ;
Jiang, Hao ;
Wang, Maolin ;
Korpelainen, Helena ;
Li, Chunyang .
PLANT CELL AND ENVIRONMENT, 2013, 36 (02) :356-364
[10]   Analysis of changes in anatomical characteristics and physiologic features of heteromorphic leaves in a desert tree, Populus euphratica [J].
Hao, Jianqing ;
Yue, Ning ;
Zheng, Caixia .
ACTA PHYSIOLOGIAE PLANTARUM, 2017, 39 (08)