Impact of population size on early adaptation in rugged fitness landscapes

被引:4
作者
Servajean, Richard [1 ,2 ]
Bitbol, Anne-Florence [1 ,2 ]
机构
[1] Ecole Polytech Fed Lausanne EPFL, Inst Bioengn, Sch Life Sci, CH-1015 Lausanne, Switzerland
[2] SIB Swiss Inst Bioinformat, CH-1015 Lausanne, Switzerland
基金
欧盟地平线“2020”; 欧洲研究理事会;
关键词
fitness landscapes; epistasis; stochastic simulations; mathematical modelling; adaptation; finite-size effects; MOLECULAR EVOLUTION; PREDICTABILITY; EPISTASIS; DYNAMICS; MODEL; PROBABILITY; MUTATIONS; SELECTION; FIXATION; CONTACTS;
D O I
10.1098/rstb.2022.0045
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Owing to stochastic fluctuations arising from finite population size, known as genetic drift, the ability of a population to explore a rugged fitness landscape depends on its size. In the weak mutation regime, while the mean steady-state fitness increases with population size, we find that the height of the first fitness peak encountered when starting from a random genotype displays various behaviours versus population size, even among small and simple rugged landscapes. We show that the accessibility of the different fitness peaks is key to determining whether this height overall increases or decreases with population size. Furthermore, there is often a finite population size that maximizes the height of the first fitness peak encountered when starting from a random genotype. This holds across various classes of model rugged landscapes with sparse peaks, and in some experimental and experimentally inspired ones. Thus, early adaptation in rugged fitness landscapes can be more efficient and predictable for relatively small population sizes than in the large-size limit.This article is part of the theme issue 'Interdisciplinary approaches to predicting evolutionary biology'.
引用
收藏
页数:11
相关论文
共 50 条
  • [21] Impact of In Vivo Protein Folding Probability on Local Fitness Landscapes
    Faber, Matthew S.
    Wrenbeck, Emily E.
    Azouz, Laura R.
    Steiner, Paul J.
    Whitehead, Timothy A.
    MOLECULAR BIOLOGY AND EVOLUTION, 2019, 36 (12) : 2764 - 2777
  • [22] Article Rugged fitness landscapes minimize promiscuity in the evolution of transcriptional repressors
    Meger, Anthony T.
    Spence, Matthew A.
    Sandhu, Mahakaran
    Matthews, Dana
    Chen, Jackie
    Jackson, Colin J.
    Raman, Srivatsan
    CELL SYSTEMS, 2024, 15 (04) : 374 - 387.e6
  • [23] Problem Features versus Algorithm Performance on Rugged Multiobjective Combinatorial Fitness Landscapes
    Daolio, Fabio
    Liefooghe, Arnaud
    Verel, Sebastien
    Aguirre, Hernan
    Tanaka, Kiyoshi
    EVOLUTIONARY COMPUTATION, 2017, 25 (04) : 555 - 585
  • [24] Computational and Experimental Exploration of Protein Fitness Landscapes: Navigating Smooth and Rugged Terrains
    Sandhu, Mahakaran
    Chen, John Z.
    Matthews, Dana S.
    Spence, Matthew A.
    Pulsford, Sacha B.
    Gall, Barnabas
    Kaczmarski, Joe A.
    Nichols, James
    Tokuriki, Nobuhiko
    Jackson, Colin J.
    BIOCHEMISTRY, 2025,
  • [25] Evolutionary dynamics on rugged fitness landscapes: Exact dynamics and information theoretical aspects
    Saakian, David B.
    Fontanari, Jose F.
    PHYSICAL REVIEW E, 2009, 80 (04):
  • [26] FISHER'S GEOMETRIC MODEL OF ADAPTATION MEETS THE FUNCTIONAL SYNTHESIS: DATA ON PAIRWISE EPISTASIS FOR FITNESS YIELDS INSIGHTS INTO THE SHAPE AND SIZE OF PHENOTYPE SPACE
    Weinreich, Daniel M.
    Knies, Jennifer L.
    EVOLUTION, 2013, 67 (10) : 2957 - 2972
  • [27] Evolutionary "Crowdsourcing": Alignment of Fitness Landscapes Allows for Cross-species Adaptation of a Horizontally Transferred Gene
    Kosterlitz, Olivia
    Grassi, Nathan
    Werner, Bailey
    Mcgee, Ryan Seamus
    Top, Eva M.
    Kerr, Benjamin
    MOLECULAR BIOLOGY AND EVOLUTION, 2023, 40 (11)
  • [28] Deterministic evolution of an asexual population under the action of beneficial and deleterious mutations on additive fitness landscapes
    Jain, Kavita
    John, Sona
    THEORETICAL POPULATION BIOLOGY, 2016, 112 : 117 - 125
  • [29] Variation in the Fitness Effects of Mutations with Population Density and Size in Escherichia coli
    Cao, Huansheng
    Butler, Kevin
    Hossain, Mithi
    Lewis, James D.
    PLOS ONE, 2014, 9 (08):
  • [30] Effects of landscapes and range expansion on population structure and local adaptation
    Zhao, Wei
    Sun, Yan-Qiang
    Pan, Jin
    Sullivan, Alexis R.
    Arnold, Michael L.
    Mao, Jian-Feng
    Wang, Xiao-Ru
    NEW PHYTOLOGIST, 2020, 228 (01) : 330 - 343