Identifying drug interactions using machine learning

被引:2
作者
Demirsoy, Idris [1 ]
Karaibrahimoglu, Adnan [2 ]
机构
[1] Usak Univ, Dept Comp Engn, Fac Engn, Usak, Turkiye
[2] Suleyman Demirel Univ, Dept Biostat & Med Informat, Isparta, Turkiye
来源
ADVANCES IN CLINICAL AND EXPERIMENTAL MEDICINE | 2023年 / 32卷 / 08期
关键词
prediction; machine learning algorithms; drug-drug interaction; similarity matrices; biostatistics; TARGET INTERACTIONS; PREDICTION;
D O I
10.17219/acem/169852
中图分类号
R-3 [医学研究方法]; R3 [基础医学];
学科分类号
1001 ;
摘要
The majority of Americans, accounting for 51% of the population, take 2 or more drugs daily. Unfortunately, nearly 100,000 people die annually as a result of adverse drug reactions (ADRs), making it the 4(th) most common cause of mortality in the USA. Drug-drug interactions (DDIs) and their impact on patients represent critical challenges for the healthcare system. To reduce the incidence of ADRs, this study focuses on identifying DDIs using a machine-learning approach. Drug-related information was obtained from various free databases, including DrugBank, BioGRID and Comparative Toxicogenomics Database. Eight similarity matrices between drugs were created as covariates in the model in order to assess their influence on DDIs. Three distinct machine learning algorithms were considered, namely, logistic regression (LR), eXtreme Gradient Boosting (XGBoost) and neural network (NN). Our study examined 22 notable drugs and their interactions with 841 other drugs from DrugBank. The accuracy of the machine learning approaches ranged from 68% to 78%, while the F1 scores ranged from 78% to 83%. Our study indicates that enzyme and target similarity are the most significant parameters in identifying DDIs. Finally, our data-driven approach reveals that machine learning methods can accurately predict DDIs and provide additional insights in a timely and cost-effective manner.
引用
收藏
页码:829 / 838
页数:10
相关论文
共 27 条
  • [1] State-of-the-art in artificial neural network applications: A survey
    Abiodun, Oludare Isaac
    Jantan, Aman
    Omolara, Abiodun Esther
    Dada, Kemi Victoria
    Mohamed, Nachaat AbdElatif
    Arshad, Humaira
    [J]. HELIYON, 2018, 4 (11)
  • [2] Agarap A. F., 2018, arXiv, DOI DOI 10.48550/ARXIV.1803.08375
  • [3] Why is Tanimoto index an appropriate choice for fingerprint-based similarity calculations?
    Bajusz, David
    Racz, Anita
    Heberger, Kroly
    [J]. JOURNAL OF CHEMINFORMATICS, 2015, 7
  • [4] Supervised prediction of drug-target interactions using bipartite local models
    Bleakley, Kevin
    Yamanishi, Yoshihiro
    [J]. BIOINFORMATICS, 2009, 25 (18) : 2397 - 2403
  • [5] Improving protein-protein interactions prediction accuracy using XGBoost feature selection and stacked ensemble classifier
    Chen, Cheng
    Zhang, Qingmei
    Yu, Bin
    Yu, Zhaomin
    Lawrence, Patrick J.
    Ma, Qin
    Zhang, Yan
    [J]. COMPUTERS IN BIOLOGY AND MEDICINE, 2020, 123
  • [6] Chen T., 2022, Package 'xgboost'
  • [7] Chen T, 2015, R PACKAGE VERSION 04, P1, DOI DOI 10.1145/2939672.2939785
  • [8] XGBoost: A Scalable Tree Boosting System
    Chen, Tianqi
    Guestrin, Carlos
    [J]. KDD'16: PROCEEDINGS OF THE 22ND ACM SIGKDD INTERNATIONAL CONFERENCE ON KNOWLEDGE DISCOVERY AND DATA MINING, 2016, : 785 - 794
  • [9] Church K., 1999, TEXT SPEECH LANG TEC, P283
  • [10] Demirsoy I, 2020, Estimating the Intensity of Point Processes on Linear Networks