Integrative Analysis of Multi-Omic Data for the Characteristics of Endometrial Cancer

被引:0
|
作者
Li, Tong [1 ]
Ruan, Zhijun [2 ]
Song, Chunli [3 ]
Yin, Feng [3 ]
Zhang, Tuanjie [2 ]
Shi, Liyun [1 ]
Zuo, Min [4 ]
Lu, Linlin [5 ]
An, Yuhao [2 ]
Wang, Rui [2 ]
Ye, Xiyang [1 ]
机构
[1] Shenzhen Peoples Hosp, Dept Gynecol, Shenzhen 518020, Guangdong, Peoples R China
[2] Pingshan Translat Med Ctr, Shenzhen Bay Lab, Shenzhen 518118, Peoples R China
[3] Peking Univ, Sch Chem Biol & Biotechnol, Shenzhen Grad Sch, Shenzhen 518055, Peoples R China
[4] Shenzhen Peoples Hosp, Dept Pathol, Shenzhen 518020, Guangdong, Peoples R China
[5] Guangzhou Univ Chinese Med, Int Inst Translat Chinese Med, Guangzhou 510006, Guangdong, Peoples R China
来源
ACS OMEGA | 2024年 / 9卷 / 12期
基金
中国国家自然科学基金;
关键词
ATYPICAL HYPERPLASIA; PROTEIN; MANAGEMENT; PATHWAY; KINASE;
D O I
10.1021/acsomega.4c00375
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Endometrial cancer (EC) is a frequently diagnosed gynecologic cancer. Identifying reliable prognostic genes for predicting EC onset is crucial for reducing patient morbidity and mortality. Here, a comprehensive strategy with transcriptomic and proteomic data was performed to measure EC's characteristics. Based on the publicly available RNA-seq data, death-associated protein kinase 3, recombination signal-binding protein for the immunoglobulin kappa J region, and myosin light chain 9 were screened out as potential biomarkers that affect the EC patients' prognosis. A linear model was further constructed by multivariate Cox regression for the prediction of the risk of being malignant. From further integrative analysis, exosomes were found to have a highly enriched role that might participate in EC occurrence. The findings were validated by qRT-polymerase chain reaction (PCR) and western blotting. Collectively, we constructed a prognostic-gene-based model for EC prediction and found that exosomes participate in EC incidents, revealing significantly promising support for the diagnosis of EC.
引用
收藏
页码:14489 / 14499
页数:11
相关论文
共 50 条
  • [41] Integrative multi-omic analysis identifies new drivers and pathways in molecularly distinct subtypes of ALS
    Morello, Giovanna
    Guarnaccia, Maria
    Spampinato, Antonio Gianmaria
    Salomone, Salvatore
    D'Agata, Velia
    Conforti, Francesca Luisa
    Aronica, Eleonora
    Cavallaro, Sebastiano
    SCIENTIFIC REPORTS, 2019, 9 (1)
  • [42] Cancer driver mutation prediction through Bayesian integration of multi-omic data
    Wang, Zixing
    Ng, Kwok-Shing
    Chen, Tenghui
    Kim, Tae-Beom
    Wang, Fang
    Shaw, Kenna
    Scott, Kenneth L.
    Meric-Bernstam, Funda
    Mills, Gordon B.
    Chen, Ken
    PLOS ONE, 2018, 13 (05):
  • [44] Integrative multi-omic analysis identifies new drivers and pathways in molecularly distinct subtypes of ALS
    Giovanna Morello
    Maria Guarnaccia
    Antonio Gianmaria Spampinato
    Salvatore Salomone
    Velia D’Agata
    Francesca Luisa Conforti
    Eleonora Aronica
    Sebastiano Cavallaro
    Scientific Reports, 9
  • [45] Artificial intelligence uses multi-omic data to predict pancreatic cancer outcomes
    Osipov, Arsen
    Theodorescu, Dan
    NATURE CANCER, 2024, 5 (02) : 226 - 227
  • [46] Selecting targets for the diagnosis of Schistosoma mansoni infection: An integrative approach using multi-omic and immunoinformatics data
    Carvalho, Gardenia B. F.
    Resende, Daniela M.
    Siqueira, Liliane M. V.
    Lopes, Marcelo D.
    Lopes, Debora O.
    Coelho, Paulo Marcos Z.
    Teixeira-Carvalho, Andrea
    Ruiz, Jeronimo C.
    Fonseca, Cristina T.
    PLOS ONE, 2017, 12 (08):
  • [47] Multi-Omic Profiling of Multi-Biosamples Reveals the Role of Amino Acid and Nucleotide Metabolism in Endometrial Cancer
    Yi, Runqiu
    Xie, Liying
    Wang, Xiaoqing
    Shen, Chengpin
    Chen, Xiaojun
    Qiao, Liang
    FRONTIERS IN ONCOLOGY, 2022, 12
  • [48] Supervised Graph Clustering for Cancer Subtyping Based on Survival Analysis and Integration of Multi-Omic Tumor Data
    Liu, Cheng
    Cao, Wenming
    Wu, Si
    Shen, Wenjun
    Jiang, Dazhi
    Yu, Zhiwen
    Wong, Hau-San
    IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2022, 19 (02) : 1193 - 1202
  • [49] Clinical utility of integrative multi-omic and multi-modal profiling of FFPE specimens
    Watanabe, Kousuke
    Tatsuno, Kenji
    Tsutsumi, Shuichi
    Bojan, Losic
    Ueda, Hiroki
    Ichijo, Toshimitsu
    Ushiku, Aya
    Kage, Hidenori
    Ushiku, Tetsuo
    Donavan, Cheng
    Aburatani, Hiroyuki
    Oda, Katsutoshi
    CANCER SCIENCE, 2025, 116 : 386 - 386
  • [50] MULTI-OMIC ANALYSIS OF ENDOMETRIAL DECIDUALIZATION RESISTANCE UNVEILS A MOSAIC EPITHELIAL-STROMAL SHIFT
    Munoz Blat, Irene
    Perez-Moraga, Raul
    Castillo-Marco, Nerea
    Cordero, Teresa
    Ochando Hernandez, Ana
    Ortega Sanchis, Sheila
    Monfort Ortiz, Isauro Rogelio
    Satorres, Elena
    Novillo Del Alamo, Blanca
    Perales-Marin, Alfredo
    Gormley, Matthew
    Beatriz, Roson
    Fisher, Susan J.
    Simon, Carlos
    Garrido-Gomez, Tamara
    FERTILITY AND STERILITY, 2024, 122 (04) : E371 - E371