tRF-21-LNK8KEP1B as a potential novel diagnostic biomarker for enthesitis-related arthritis
被引:3
作者:
Wang, Panpan
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Nanjing Med Univ, Childrens Hosp, Dept Rheumatol & Immunol, Nanjing, Peoples R ChinaNanjing Med Univ, Childrens Hosp, Dept Rheumatol & Immunol, Nanjing, Peoples R China
Wang, Panpan
[1
]
Fu, Ziyi
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机构:
Nanjing Med Univ, Affiliated Hosp 1, Dept Maternal & Childrens Med Res Ctr, Nanjing, Peoples R ChinaNanjing Med Univ, Childrens Hosp, Dept Rheumatol & Immunol, Nanjing, Peoples R China
Fu, Ziyi
[2
]
Liu, Yingying
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机构:
Nanjing Med Univ, Childrens Hosp, Dept Rheumatol & Immunol, Nanjing, Peoples R ChinaNanjing Med Univ, Childrens Hosp, Dept Rheumatol & Immunol, Nanjing, Peoples R China
Liu, Yingying
[1
]
Huang, Shuoyin
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Nanjing Med Univ, Childrens Hosp, Dept Rheumatol & Immunol, Nanjing, Peoples R ChinaNanjing Med Univ, Childrens Hosp, Dept Rheumatol & Immunol, Nanjing, Peoples R China
Huang, Shuoyin
[1
]
Guo, Yanli
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Nanjing Med Univ, Childrens Hosp, Dept Rheumatol & Immunol, Nanjing, Peoples R ChinaNanjing Med Univ, Childrens Hosp, Dept Rheumatol & Immunol, Nanjing, Peoples R China
Guo, Yanli
[1
]
Jin, Jing
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Nanjing Med Univ, Childrens Hosp, Dept Rheumatol & Immunol, Nanjing, Peoples R ChinaNanjing Med Univ, Childrens Hosp, Dept Rheumatol & Immunol, Nanjing, Peoples R China
Jin, Jing
[1
]
Fang, Yuying
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Nanjing Med Univ, Childrens Hosp, Dept Rheumatol & Immunol, Nanjing, Peoples R ChinaNanjing Med Univ, Childrens Hosp, Dept Rheumatol & Immunol, Nanjing, Peoples R China
Fang, Yuying
[1
]
Pan, Yuting
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Nanjing Med Univ, Childrens Hosp, Dept Rheumatol & Immunol, Nanjing, Peoples R ChinaNanjing Med Univ, Childrens Hosp, Dept Rheumatol & Immunol, Nanjing, Peoples R China
Pan, Yuting
[1
]
Fan, Zhidan
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Nanjing Med Univ, Childrens Hosp, Dept Rheumatol & Immunol, Nanjing, Peoples R China
Nanjing Med Univ, Childrens Hosp, Dept Rheumatol & Immunol, Nanjing 210008, Peoples R ChinaNanjing Med Univ, Childrens Hosp, Dept Rheumatol & Immunol, Nanjing, Peoples R China
Fan, Zhidan
[1
,3
]
Yu, Haiguo
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Nanjing Med Univ, Childrens Hosp, Dept Rheumatol & Immunol, Nanjing, Peoples R China
Nanjing Med Univ, Childrens Hosp, Dept Rheumatol & Immunol, Nanjing 210008, Peoples R ChinaNanjing Med Univ, Childrens Hosp, Dept Rheumatol & Immunol, Nanjing, Peoples R China
Yu, Haiguo
[1
,3
]
机构:
[1] Nanjing Med Univ, Childrens Hosp, Dept Rheumatol & Immunol, Nanjing, Peoples R China
[2] Nanjing Med Univ, Affiliated Hosp 1, Dept Maternal & Childrens Med Res Ctr, Nanjing, Peoples R China
[3] Nanjing Med Univ, Childrens Hosp, Dept Rheumatol & Immunol, Nanjing 210008, Peoples R China
Objective: tRNA-derived fragments (tRFs) play crucial roles in the progression of various diseases, and widely distribute in human tissues, including blood and urine. The diagnosis of enthesitis-related arthritis (ERA) is based on the observation of clinical manifestations. Therefore, we aimed to investigate whether serum tRFs can be used as diagnostic markers for ERA. Methods: Serum was collected from children admitted to the Children's Hospital Affiliated with Nanjing Medical University between February 2022 to October 2022. The expression profiles of tRFs in the serum of ERA patients (n = 5) and healthy controls (HCs; n = 5) were investigated using small RNA high-throughput sequencing. The level and diagnostic value of tRF-21-LNK8KEP1B were evaluated by real-time quantitative PCR in serum samples from 30 ERA patients and 31 HCs. The specificity and sensitivity of tRFs were determined using receiver operating characteristic analyses. Bioinformatics analysis was performed to explore and identify the potential biological pathways induced by tRFs. Results: Ninety-eight upregulated and 63 downregulated tRFs were identified in the serum. We selected tRF-21LNK8KEP1B as a candidate marker using KEGG pathway enrichment and PCR validation. tRF-21-LNK8KEP1B was substantially increased in the serum of ERA patients compared with that in HCs. The area under the curve (AUC) for tRF-21-LNK8KEP1B in the ERA group was 0.7849. Conclusions: Collectively, we demonstrated the promising role of serum tRF-21-LNK8KEP1B-levels as a diagnostic biomarker for ERA.
机构:
Stanford Univ, Dept Pediat, Stanford, CA 94305 USA
Stanford Univ, Dept Genet, Stanford, CA 94305 USAStanford Univ, Dept Pediat, Stanford, CA 94305 USA
Haussecker, Dirk
Huang, Yong
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Stanford Univ, Dept Pediat, Stanford, CA 94305 USA
Stanford Univ, Dept Genet, Stanford, CA 94305 USAStanford Univ, Dept Pediat, Stanford, CA 94305 USA
Huang, Yong
Lau, Ashley
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Stanford Univ, Dept Pediat, Stanford, CA 94305 USA
Stanford Univ, Dept Genet, Stanford, CA 94305 USAStanford Univ, Dept Pediat, Stanford, CA 94305 USA
Lau, Ashley
Parameswaran, Poornima
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Stanford Univ, Dept Microbiol & Immunol, Stanford, CA 94305 USAStanford Univ, Dept Pediat, Stanford, CA 94305 USA
Parameswaran, Poornima
Fire, Andrew Z.
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机构:
Stanford Univ, Dept Genet, Stanford, CA 94305 USA
Stanford Univ, Dept Pathol, Stanford, CA 94305 USAStanford Univ, Dept Pediat, Stanford, CA 94305 USA
Fire, Andrew Z.
Kay, Mark A.
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机构:
Stanford Univ, Dept Pediat, Stanford, CA 94305 USA
Stanford Univ, Dept Genet, Stanford, CA 94305 USAStanford Univ, Dept Pediat, Stanford, CA 94305 USA
机构:
Thomas Jefferson Univ, Sidney Kimmel Med Coll, Computat Med Ctr, Philadelphia, PA 19107 USAThomas Jefferson Univ, Sidney Kimmel Med Coll, Computat Med Ctr, Philadelphia, PA 19107 USA
Honda, Shozo
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Loher, Phillipe
Shigematsu, Megumi
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Thomas Jefferson Univ, Sidney Kimmel Med Coll, Computat Med Ctr, Philadelphia, PA 19107 USAThomas Jefferson Univ, Sidney Kimmel Med Coll, Computat Med Ctr, Philadelphia, PA 19107 USA
Shigematsu, Megumi
Palazzo, Juan P.
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机构:Thomas Jefferson Univ, Sidney Kimmel Med Coll, Computat Med Ctr, Philadelphia, PA 19107 USA
Palazzo, Juan P.
Suzuki, Ryusuke
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机构:
Thomas Jefferson Univ, Sidney Kimmel Med Coll, Dept Pathol Anat & Cell Biol, Philadelphia, PA 19107 USA
Cedars Sinai Med Ctr, Dept Biomed Sci, Los Angeles, CA 90048 USAThomas Jefferson Univ, Sidney Kimmel Med Coll, Computat Med Ctr, Philadelphia, PA 19107 USA
Suzuki, Ryusuke
Imoto, Issei
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机构:
Univ Tokushima, Grad Sch, Inst Hlth Biosci, Dept Human Genet, Tokushima 7708503, JapanThomas Jefferson Univ, Sidney Kimmel Med Coll, Computat Med Ctr, Philadelphia, PA 19107 USA
Imoto, Issei
Rigoutsos, Isidore
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Thomas Jefferson Univ, Sidney Kimmel Med Coll, Computat Med Ctr, Philadelphia, PA 19107 USAThomas Jefferson Univ, Sidney Kimmel Med Coll, Computat Med Ctr, Philadelphia, PA 19107 USA
Rigoutsos, Isidore
Kirino, Yohei
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机构:
Thomas Jefferson Univ, Sidney Kimmel Med Coll, Computat Med Ctr, Philadelphia, PA 19107 USAThomas Jefferson Univ, Sidney Kimmel Med Coll, Computat Med Ctr, Philadelphia, PA 19107 USA
机构:
Stanford Univ, Dept Pediat, Stanford, CA 94305 USA
Stanford Univ, Dept Genet, Stanford, CA 94305 USAStanford Univ, Dept Pediat, Stanford, CA 94305 USA
Haussecker, Dirk
Huang, Yong
论文数: 0引用数: 0
h-index: 0
机构:
Stanford Univ, Dept Pediat, Stanford, CA 94305 USA
Stanford Univ, Dept Genet, Stanford, CA 94305 USAStanford Univ, Dept Pediat, Stanford, CA 94305 USA
Huang, Yong
Lau, Ashley
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h-index: 0
机构:
Stanford Univ, Dept Pediat, Stanford, CA 94305 USA
Stanford Univ, Dept Genet, Stanford, CA 94305 USAStanford Univ, Dept Pediat, Stanford, CA 94305 USA
Lau, Ashley
Parameswaran, Poornima
论文数: 0引用数: 0
h-index: 0
机构:
Stanford Univ, Dept Microbiol & Immunol, Stanford, CA 94305 USAStanford Univ, Dept Pediat, Stanford, CA 94305 USA
Parameswaran, Poornima
Fire, Andrew Z.
论文数: 0引用数: 0
h-index: 0
机构:
Stanford Univ, Dept Genet, Stanford, CA 94305 USA
Stanford Univ, Dept Pathol, Stanford, CA 94305 USAStanford Univ, Dept Pediat, Stanford, CA 94305 USA
Fire, Andrew Z.
Kay, Mark A.
论文数: 0引用数: 0
h-index: 0
机构:
Stanford Univ, Dept Pediat, Stanford, CA 94305 USA
Stanford Univ, Dept Genet, Stanford, CA 94305 USAStanford Univ, Dept Pediat, Stanford, CA 94305 USA
机构:
Thomas Jefferson Univ, Sidney Kimmel Med Coll, Computat Med Ctr, Philadelphia, PA 19107 USAThomas Jefferson Univ, Sidney Kimmel Med Coll, Computat Med Ctr, Philadelphia, PA 19107 USA
Honda, Shozo
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机构:
Loher, Phillipe
Shigematsu, Megumi
论文数: 0引用数: 0
h-index: 0
机构:
Thomas Jefferson Univ, Sidney Kimmel Med Coll, Computat Med Ctr, Philadelphia, PA 19107 USAThomas Jefferson Univ, Sidney Kimmel Med Coll, Computat Med Ctr, Philadelphia, PA 19107 USA
Shigematsu, Megumi
Palazzo, Juan P.
论文数: 0引用数: 0
h-index: 0
机构:Thomas Jefferson Univ, Sidney Kimmel Med Coll, Computat Med Ctr, Philadelphia, PA 19107 USA
Palazzo, Juan P.
Suzuki, Ryusuke
论文数: 0引用数: 0
h-index: 0
机构:
Thomas Jefferson Univ, Sidney Kimmel Med Coll, Dept Pathol Anat & Cell Biol, Philadelphia, PA 19107 USA
Cedars Sinai Med Ctr, Dept Biomed Sci, Los Angeles, CA 90048 USAThomas Jefferson Univ, Sidney Kimmel Med Coll, Computat Med Ctr, Philadelphia, PA 19107 USA
Suzuki, Ryusuke
Imoto, Issei
论文数: 0引用数: 0
h-index: 0
机构:
Univ Tokushima, Grad Sch, Inst Hlth Biosci, Dept Human Genet, Tokushima 7708503, JapanThomas Jefferson Univ, Sidney Kimmel Med Coll, Computat Med Ctr, Philadelphia, PA 19107 USA
Imoto, Issei
Rigoutsos, Isidore
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h-index: 0
机构:
Thomas Jefferson Univ, Sidney Kimmel Med Coll, Computat Med Ctr, Philadelphia, PA 19107 USAThomas Jefferson Univ, Sidney Kimmel Med Coll, Computat Med Ctr, Philadelphia, PA 19107 USA
Rigoutsos, Isidore
Kirino, Yohei
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机构:
Thomas Jefferson Univ, Sidney Kimmel Med Coll, Computat Med Ctr, Philadelphia, PA 19107 USAThomas Jefferson Univ, Sidney Kimmel Med Coll, Computat Med Ctr, Philadelphia, PA 19107 USA