tRF-21-LNK8KEP1B as a potential novel diagnostic biomarker for enthesitis-related arthritis

被引:3
作者
Wang, Panpan [1 ]
Fu, Ziyi [2 ]
Liu, Yingying [1 ]
Huang, Shuoyin [1 ]
Guo, Yanli [1 ]
Jin, Jing [1 ]
Fang, Yuying [1 ]
Pan, Yuting [1 ]
Fan, Zhidan [1 ,3 ]
Yu, Haiguo [1 ,3 ]
机构
[1] Nanjing Med Univ, Childrens Hosp, Dept Rheumatol & Immunol, Nanjing, Peoples R China
[2] Nanjing Med Univ, Affiliated Hosp 1, Dept Maternal & Childrens Med Res Ctr, Nanjing, Peoples R China
[3] Nanjing Med Univ, Childrens Hosp, Dept Rheumatol & Immunol, Nanjing 210008, Peoples R China
基金
中国国家自然科学基金;
关键词
tRF-21-LNK8KEP1B; ERA; Serum; tRNA-derived fragments; TRANSFER-RNA FRAGMENTS; TRNASCAN-SE; CANCER; BREAST; GENES;
D O I
10.1016/j.intimp.2023.110820
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
Objective: tRNA-derived fragments (tRFs) play crucial roles in the progression of various diseases, and widely distribute in human tissues, including blood and urine. The diagnosis of enthesitis-related arthritis (ERA) is based on the observation of clinical manifestations. Therefore, we aimed to investigate whether serum tRFs can be used as diagnostic markers for ERA. Methods: Serum was collected from children admitted to the Children's Hospital Affiliated with Nanjing Medical University between February 2022 to October 2022. The expression profiles of tRFs in the serum of ERA patients (n = 5) and healthy controls (HCs; n = 5) were investigated using small RNA high-throughput sequencing. The level and diagnostic value of tRF-21-LNK8KEP1B were evaluated by real-time quantitative PCR in serum samples from 30 ERA patients and 31 HCs. The specificity and sensitivity of tRFs were determined using receiver operating characteristic analyses. Bioinformatics analysis was performed to explore and identify the potential biological pathways induced by tRFs. Results: Ninety-eight upregulated and 63 downregulated tRFs were identified in the serum. We selected tRF-21LNK8KEP1B as a candidate marker using KEGG pathway enrichment and PCR validation. tRF-21-LNK8KEP1B was substantially increased in the serum of ERA patients compared with that in HCs. The area under the curve (AUC) for tRF-21-LNK8KEP1B in the ERA group was 0.7849. Conclusions: Collectively, we demonstrated the promising role of serum tRF-21-LNK8KEP1B-levels as a diagnostic biomarker for ERA.
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页数:7
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共 32 条
  • [1] BOREK E, 1977, CANCER RES, V37, P3362
  • [2] GtRNAdb 2.0: an expanded database of transfer RNA genes identified in complete and draft genomes
    Chan, Patricia P.
    Lowe, Todd M.
    [J]. NUCLEIC ACIDS RESEARCH, 2016, 44 (D1) : D184 - D189
  • [3] Dhahbi Joseph M, 2014, Biomark Cancer, V6, P37, DOI 10.4137/BIC.S20764
  • [4] Emerging roles of immunoproteasomes beyond MHC class I antigen processing
    Ebstein, Frederic
    Kloetzel, Peter-Michael
    Krueger, Elke
    Seifert, Ulrike
    [J]. CELLULAR AND MOLECULAR LIFE SCIENCES, 2012, 69 (15) : 2543 - 2558
  • [5] Endogenous tRNA-Derived Fragments Suppress Breast Cancer Progression via YBX1 Displacement
    Goodarzi, Hani
    Liu, Xuhang
    Nguyen, Hoang C. B.
    Zhang, Steven
    Fish, Lisa
    Tavazoie, Sohail F.
    [J]. CELL, 2015, 161 (04) : 790 - 802
  • [6] Tumour-educated circulating monocytes are powerful candidate biomarkers for diagnosis and disease follow-up of colorectal cancer
    Hamm, Alexander
    Prenen, Hans
    Van Delm, Wouter
    Di Matteo, Mario
    Wenes, Mathias
    Delamarre, Estelle
    Schmidt, Thomas
    Weitz, Juergen
    Sarmiento, Roberta
    Dezi, Angelo
    Gasparini, Giampietro
    Rothe, Franoise
    Schmitz, Robin
    D'Hoore, Andre
    Iserentant, Hannes
    Hendlisz, Alain
    Mazzone, Massimiliano
    [J]. GUT, 2016, 65 (06) : 990 - 1000
  • [7] Human tRNA-derived small RNAs in the global regulation of RNA silencing
    Haussecker, Dirk
    Huang, Yong
    Lau, Ashley
    Parameswaran, Poornima
    Fire, Andrew Z.
    Kay, Mark A.
    [J]. RNA, 2010, 16 (04) : 673 - 695
  • [8] Management of juvenile idiopathic arthritis: hitting the target
    Hinze, Claas
    Gohar, Faekah
    Foell, Dirk
    [J]. NATURE REVIEWS RHEUMATOLOGY, 2015, 11 (05) : 290 - 300
  • [9] Elevation of plasma tRNA fragments precedes seizures in human epilepsy
    Hogg, Marion C.
    Raoof, Rana
    El Naggar, Hany
    Monsefi, Naser
    Delanty, Norman
    O'Brien, Donncha F.
    Bauer, Sebastian
    Rosenow, Felix
    Henshall, David C.
    Prehn, Jochen H. M.
    [J]. JOURNAL OF CLINICAL INVESTIGATION, 2019, 129 (07) : 2946 - 2951
  • [10] Sex hormone-dependent tRNA halves enhance cell proliferation in breast and prostate cancers
    Honda, Shozo
    Loher, Phillipe
    Shigematsu, Megumi
    Palazzo, Juan P.
    Suzuki, Ryusuke
    Imoto, Issei
    Rigoutsos, Isidore
    Kirino, Yohei
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2015, 112 (29) : E3816 - E3825