A dataset for benchmarking Neotropical anuran calls identification in passive acoustic monitoring

被引:16
作者
Canas, Juan Sebastian [1 ]
Toro-Gomez, Maria Paula [1 ]
Sugai, Larissa Sayuri Moreira [2 ]
Restrepo, Hernan Dario Benitez [3 ]
Rudas, Jorge [1 ]
Bautista, Breyner Posso [1 ]
Toledo, Luis Felipe [4 ]
Dena, Simone [5 ]
Domingos, Adao Henrique Rosa [6 ]
de Souza, Franco Leandro [7 ]
Neckel-Oliveira, Selvino [8 ]
da Rosa, Anderson [8 ]
Carvalho-Rocha, Vitor [8 ]
Bernardy, Jose Vinicius [9 ]
Sugai, Jose Luiz Massao Moreira [9 ]
dos Santos, Carolina Emilia [9 ]
Bastos, Rogerio Pereira [9 ]
Llusia, Diego [10 ,11 ,12 ]
Ulloa, Juan Sebastian [1 ]
机构
[1] Inst Invest Recursos Biol Alexander Von Humboldt, Ave Paseo Bolivar 16-20, Bogota, Colombia
[2] Cornell Univ, K Lisa Yang Ctr Conservat Bioacoust, Cornell Lab Ornithol, 159 Sapsucker Woods Rd, Ithaca, NY 14850 USA
[3] Pontificia Univ Javeriana, Secc Cali, Calle 18 118-250, Cali, Valle Del Cauca, Colombia
[4] Univ Estadual Campinas, Lab Hist Nat Anfibios Brasileiros LaHNAB, Campinas, SP, Brazil
[5] Univ Estadual Campinas, Museu Diversidade Biol MDBio, Campinas, SP, Brazil
[6] Inst Pesquisa Biodiversidade IPBio, Reserva Betary, Iporanga, SP, Brazil
[7] Univ Fed Mato Grosso Do Sul, Inst Biociencias, Campo Grande, MS, Brazil
[8] Univ Fed Santa Catarina, Dept Ecol & Zool, Florianopolis, SC, Brazil
[9] Univ Fed Goias, Goiania, Go, Brazil
[10] Univ Autonoma Madrid, Fac Ciencias, Dept Ecol, Terr Ecol Grp, C-Darwin 2,Ciudad Univ Cantoblanco,Edificio Biol, Madrid 28049, Spain
[11] Univ Autonoma Madrid, Ctr Invest Biodivers & Cambio Global CIBC, C-Darwin 2, Madrid 28049, Spain
[12] Univ Fed Goias, Inst Ciencias Biol, Dept Ecol, Lab Herpetol & Comportamento Anim, Goiania, Go, Brazil
关键词
D O I
10.1038/s41597-023-02666-2
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Global change is predicted to induce shifts in anuran acoustic behavior, which can be studied through passive acoustic monitoring (PAM). Understanding changes in calling behavior requires automatic identification of anuran species, which is challenging due to the particular characteristics of neotropical soundscapes. In this paper, we introduce a large-scale multi-species dataset of anuran amphibians calls recorded by PAM, that comprises 27 hours of expert annotations for 42 different species from two Brazilian biomes. We provide open access to the dataset, including the raw recordings, experimental setup code, and a benchmark with a baseline model of the fine-grained categorization problem. Additionally, we highlight the challenges of the dataset to encourage machine learning researchers to solve the problem of anuran call identification towards conservation policy. All our experiments and resources have been made available at https://soundclim.github.io/anuraweb/.
引用
收藏
页数:12
相关论文
共 58 条
[1]  
[Anonymous], 2008, Threatened Amphibians of the World
[2]  
[Anonymous], 2006, Hearing and Sound Communication in Amphibians
[3]  
Aodha O. M., 2022, bioRxiv, DOI [10.1101/2022.12.14.520490, DOI 10.1101/2022.12.14.520490]
[4]  
August T. A., 2022, JNCC Report No. 707
[5]   A deafening silence: a lack of data and reproducibility in published bioacoustics research? [J].
Baker, Ed ;
Vincent, Sarah .
BIODIVERSITY DATA JOURNAL, 2019, 7
[6]  
Beery S., 2021, XRDS: Crossroads, The ACM Magazine for Students, V27, P14, DOI DOI 10.1145/3466857
[7]   The Auto Arborist Dataset: A Large-Scale Benchmark for Multiview Urban Forest Monitoring Under Domain Shift [J].
Beery, Sara ;
Wu, Guanhang ;
Edwards, Trevor ;
Pavetic, Filip ;
Majewski, Bo ;
Mukherjee, Shreyasee ;
Chan, Stanley ;
Morgan, John ;
Rathod, Vivek ;
Huang, Jonathan .
2022 IEEE/CVF CONFERENCE ON COMPUTER VISION AND PATTERN RECOGNITION (CVPR 2022), 2022, :21262-21275
[8]   Recognition in Terra Incognita [J].
Beery, Sara ;
Van Horn, Grant ;
Perona, Pietro .
COMPUTER VISION - ECCV 2018, PT XVI, 2018, 11220 :472-489
[9]   BioCPPNet: automatic bioacoustic source separation with deep neural networks [J].
Bermant, Peter C. .
SCIENTIFIC REPORTS, 2021, 11 (01)
[10]  
Canas JS., 2023, Zenodo, DOI [10.5281/zenodo.8342596, DOI 10.5281/ZENODO.8342596]