Phylogenetic analysis based on the ITS, matK and rbcL DNA barcodes and comparison of chemical contents of twelve Paeonia taxa in Turkiye

被引:3
作者
Cetiz, Mehmet Veysi [1 ,2 ]
Turumtay, Emine Akyuz [3 ]
Burnaz, Nesibe Arslan [4 ]
Ozhatay, Fatma Neriman [5 ]
Kaya, Erdal [6 ]
Memon, Abdulrezzak [2 ]
Turumtay, Halbay [7 ,8 ,9 ]
机构
[1] Univ Wurzburg, Dept Bioinformat, Biozentrum, D-97074 Wurzburg, Germany
[2] Usak Univ, Dept Mol Biol & Genet, TR-64000 Usak, Turkiye
[3] Recep Tayyip Erdogan Univ Rize, Dept Chem, TR-53100 Rize, Turkiye
[4] Gumushane Univ, Dept Nutr & Dietet, TR-29000 Gumushane, Turkiye
[5] Istanbul Univ, Fac Pharm, Dept Pharmaceut Bot, Istanbul, Turkiye
[6] Ataturk Hort Cent Res Inst, Republ Turkiye Minist Agr & Forestry, TR-77102 Yalova, Turkiye
[7] Karadeniz Tech Univ, Dept Energy Syst Engn, TR-61830 Trabzon, Turkiye
[8] Joint BioEnergy Inst, Feedstock Div, Emeryville, CA 94608 USA
[9] Lawrence Berkeley Natl Lab, Environm Genom & Syst Biol Div, Berkeley, CA 94720 USA
关键词
Paeonia; ITS region; MatK; Molecular phylogeny; Chemical content; Turkiye; RETICULATE EVOLUTION; IDENTIFICATION; BIOGEOGRAPHY;
D O I
10.1007/s11033-023-08435-z
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
BackgroudTwelve taxa of herbaceous Paeonia species were recorded in Turkiye. All definitions were performed morphologically and/or anatomically and there is no study based on DNA barcode sequences. Three barcode regions were sequenced to determine the phylogenetic relationships of Turkish Paeonia taxa. The chemical comparison of roots was also investigated.Methods and resultsThe taxons were collected between May and June 2021 from nine cities. Leaf materials were used for DNA isolation and ITS, matK and rbcL regions were amplified and sequenced. There was no difference among taxa in terms of rbcL sequences. But the ITS and matK regions distinguished 12 taxa and structured them in two groups. ITS region distinguished P. peregrina, P. arietina, and P. tenuifolia from other taxa, while matK region distinguished P. arietina and P. witmanniana from other taxa. Both barcode sequences actually showed that the registration of P. mascula subsp. arasicola was actually 100% similar to P. arietina. ITS was the most polymorphic region (n = 54) followed by matK (n = 9). These sequences could successfully discriminate Paoenia species from each other and diploid P. tenuifolia. The methanolic root (100 gr) extracts were examined for total phenolic and flavonoid content, and antioxidant activities. Significant variation was found for polyphenolic content, and antioxidant properties (TPC from 204.23 to 2343.89 mg, TFC from 7.73 to 66.16 mg, and FRAP from 523.81 to 4338.62 mg). SC50 values of ABTS and DPPH were ranged from 115.08 to 1115.52 mu g/ml and 73.83 to 963.59 mu g/ml, respectively.ConclusionIt was concluded that 11 of 12 taxa had differences in terms of ITS and matK sequences and these region must be used for the correct identification of Turkish Paeonia.
引用
收藏
页码:5195 / 5208
页数:14
相关论文
共 38 条
[21]   Capture of anti-coagulant active ingredients from Moutan Cortex by platelet immobilized chromatography and evaluation of anticoagulant activity in rats [J].
Qiu, Huihui ;
Zhang, Li ;
Zhu, Maomao ;
Zhang, Minghua ;
Chen, Juan ;
Feng, Liang ;
Jia, Xiaobin ;
Jacob, Joe Antony .
BIOMEDICINE & PHARMACOTHERAPY, 2017, 95 :235-244
[22]   Antioxidant activity applying an improved ABTS radical cation decolorization assay [J].
Re, R ;
Pellegrini, N ;
Proteggente, A ;
Pannala, A ;
Yang, M ;
Rice-Evans, C .
FREE RADICAL BIOLOGY AND MEDICINE, 1999, 26 (9-10) :1231-1237
[23]   Phylogenetic relationships in Coryphantha and implications on Pelecyphora and Escobaria (Cacteae, Cactoideae, Cactaceae) [J].
Sanchez, Daniel ;
Vazquez-Benitez, Balbina ;
Vazquez-Sanchez, Monserrat ;
Aquino, David ;
Arias, Salvador .
PHYTOKEYS, 2022, (188) :115-165
[24]   Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae) [J].
Sang, T ;
Crawford, DJ ;
Stuessy, TF .
AMERICAN JOURNAL OF BOTANY, 1997, 84 (08) :1120-1136
[25]   DOCUMENTATION OF RETICULATE EVOLUTION IN PEONIES (PEONIA) USING INTERNAL TRANSCRIBED SPACER SEQUENCES OF NUCLEAR RIBOSOMAL DNA - IMPLICATIONS FOR BIOGEOGRAPHY AND CONCERTED EVOLUTION [J].
SANG, T ;
CRAWFORD, DJ ;
STUESSY, TF .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1995, 92 (15) :6813-6817
[26]  
Singleton VL, 1999, METHOD ENZYMOL, V299, P152
[27]   Paeonia arietina and Paeonia kesrounansis bioactive constituents: NMR, LC-DAD-MS fingerprinting and in vitro assays [J].
Sut, Stefania ;
Zengin, Gokhan ;
Dall'Acqua, Stefano ;
Gazdova, Marketa ;
Smejkal, Karel ;
Bulut, Gizem ;
Dogan, Ahmet ;
Haznedaroglu, Mehmet Zeki ;
Aumeeruddy, Muhammad Zakariyyah ;
Maggi, Filippo ;
Mahomoodally, Mohamad Fawzi .
JOURNAL OF PHARMACEUTICAL AND BIOMEDICAL ANALYSIS, 2019, 165 :1-11
[28]   DNA barcoding for species identification from dried and powdered plant parts: A case study with authentication of the raw drug market samples of Sida cordifolia [J].
Vassou, Sophie Lorraine ;
Kusuma, G. ;
Parani, Madasamy .
GENE, 2015, 559 (01) :86-93
[29]  
Wali Adil Farooq, 2022, Edible plants in health and diseases, Volume I: Cultural, practical and economic value, P325, DOI 10.1007/978-981-16-4880-9_14
[30]   Lactobacillus Plantarum 299v Changes miRNA Expression in the Intestines of Piglets and Leads to Downregulation of LITAF by Regulating ssc-miR-450a [J].
Wang, Qi ;
Sun, Qian ;
Wang, Jing ;
Qiu, Xiaoyu ;
Qi, Renli ;
Huang, Jinxiu .
PROBIOTICS AND ANTIMICROBIAL PROTEINS, 2021, 13 (04) :1093-1105