Phylogenetic analysis based on the ITS, matK and rbcL DNA barcodes and comparison of chemical contents of twelve Paeonia taxa in Turkiye

被引:3
作者
Cetiz, Mehmet Veysi [1 ,2 ]
Turumtay, Emine Akyuz [3 ]
Burnaz, Nesibe Arslan [4 ]
Ozhatay, Fatma Neriman [5 ]
Kaya, Erdal [6 ]
Memon, Abdulrezzak [2 ]
Turumtay, Halbay [7 ,8 ,9 ]
机构
[1] Univ Wurzburg, Dept Bioinformat, Biozentrum, D-97074 Wurzburg, Germany
[2] Usak Univ, Dept Mol Biol & Genet, TR-64000 Usak, Turkiye
[3] Recep Tayyip Erdogan Univ Rize, Dept Chem, TR-53100 Rize, Turkiye
[4] Gumushane Univ, Dept Nutr & Dietet, TR-29000 Gumushane, Turkiye
[5] Istanbul Univ, Fac Pharm, Dept Pharmaceut Bot, Istanbul, Turkiye
[6] Ataturk Hort Cent Res Inst, Republ Turkiye Minist Agr & Forestry, TR-77102 Yalova, Turkiye
[7] Karadeniz Tech Univ, Dept Energy Syst Engn, TR-61830 Trabzon, Turkiye
[8] Joint BioEnergy Inst, Feedstock Div, Emeryville, CA 94608 USA
[9] Lawrence Berkeley Natl Lab, Environm Genom & Syst Biol Div, Berkeley, CA 94720 USA
关键词
Paeonia; ITS region; MatK; Molecular phylogeny; Chemical content; Turkiye; RETICULATE EVOLUTION; IDENTIFICATION; BIOGEOGRAPHY;
D O I
10.1007/s11033-023-08435-z
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
BackgroudTwelve taxa of herbaceous Paeonia species were recorded in Turkiye. All definitions were performed morphologically and/or anatomically and there is no study based on DNA barcode sequences. Three barcode regions were sequenced to determine the phylogenetic relationships of Turkish Paeonia taxa. The chemical comparison of roots was also investigated.Methods and resultsThe taxons were collected between May and June 2021 from nine cities. Leaf materials were used for DNA isolation and ITS, matK and rbcL regions were amplified and sequenced. There was no difference among taxa in terms of rbcL sequences. But the ITS and matK regions distinguished 12 taxa and structured them in two groups. ITS region distinguished P. peregrina, P. arietina, and P. tenuifolia from other taxa, while matK region distinguished P. arietina and P. witmanniana from other taxa. Both barcode sequences actually showed that the registration of P. mascula subsp. arasicola was actually 100% similar to P. arietina. ITS was the most polymorphic region (n = 54) followed by matK (n = 9). These sequences could successfully discriminate Paoenia species from each other and diploid P. tenuifolia. The methanolic root (100 gr) extracts were examined for total phenolic and flavonoid content, and antioxidant activities. Significant variation was found for polyphenolic content, and antioxidant properties (TPC from 204.23 to 2343.89 mg, TFC from 7.73 to 66.16 mg, and FRAP from 523.81 to 4338.62 mg). SC50 values of ABTS and DPPH were ranged from 115.08 to 1115.52 mu g/ml and 73.83 to 963.59 mu g/ml, respectively.ConclusionIt was concluded that 11 of 12 taxa had differences in terms of ITS and matK sequences and these region must be used for the correct identification of Turkish Paeonia.
引用
收藏
页码:5195 / 5208
页数:14
相关论文
共 38 条
[1]  
Awano T, 2009, P NATL ACAD SCI USA, V106, P2794, DOI [10.1073/pnas.0812297106, 10.1073/pnas.0905845106]
[2]   The ferric reducing ability of plasma (FRAP) as a measure of ''antioxidant power'': The FRAP assay [J].
Benzie, IFF ;
Strain, JJ .
ANALYTICAL BIOCHEMISTRY, 1996, 239 (01) :70-76
[3]  
BRAND-WILLIAMS W, 1995, FOOD SCI TECHNOL-LEB, V28, P25
[4]   Paeoniflorin inhibits excitatory amino acid agonist-and high-dose morphine-induced nociceptive behavior in mice via modulation of N-methyl-D-aspartate receptors [J].
Chen, Yuh-Fung ;
Lee, Ming-Ming ;
Fang, Hsun-Lang ;
Yang, Jhao-Guei ;
Chen, Yu-Chien ;
Tsai, Huei-Yann .
BMC COMPLEMENTARY AND ALTERNATIVE MEDICINE, 2016, 16
[5]   Molecular identification and phylogenetic analysis of Papaver based on ITS2 barcoding [J].
Cheng, Liu ;
Lin, Ziqing ;
Xin, Cairui ;
Sun, Haolin ;
Li, Xinyu .
JOURNAL OF FORENSIC SCIENCES, 2022, 67 (02) :712-719
[6]   Paeoniflorigenone purified from Paeonia daurica roots potently inhibits viral and bacterial DNA polymerases: investigation by experimental validation and docking simulation [J].
Demir, Adem ;
Turumtay, Halbay ;
Emirik, Mustafa ;
SandalIi, Cemal ;
Kanbolat, Seyda ;
Ozgen, Ufuk ;
Turumtay, Emine Akyuz .
MEDICINAL CHEMISTRY RESEARCH, 2019, 28 (12) :2232-2245
[7]   How many species of seed plants are there? [J].
Govaerts, R .
TAXON, 2001, 50 (04) :1085-1090
[8]   Phytochemical and Biological Studies of Paeoniaceae [J].
He, Chun-Nian ;
Peng, Yong ;
Zhang, Yao-Chun ;
Xu, Li-Jia ;
Gu, Jing ;
Xiao, Pei-Gen .
CHEMISTRY & BIODIVERSITY, 2010, 7 (04) :805-838
[9]  
Hong D.Y., 1988, Acta Phytotaxon. Sinica, V7, P33
[10]   Evaluation of Paeonia emodi for its cardioprotective potentials: An investigative study towards possible mechanism [J].
Ibrar, Muhammad ;
Khan, Mir Azam ;
Abdullah ;
Nisar, Mohammad ;
Khan, Munasib .
JOURNAL OF ETHNOPHARMACOLOGY, 2019, 231 :57-65