Single-cell transcriptome analysis for cancer and biology of the pancreas: A review on recent progress

被引:1
作者
Tamaddon, Mona [1 ]
Azimzadeh, Mostafa [2 ,3 ,4 ]
Gifani, Peyman [5 ,6 ]
Tavangar, Seyed Mohammad [1 ,7 ]
机构
[1] Univ Tehran Med Sci, Endocrinol & Metab Populat Sci Inst, Chron Dis Res Ctr, Tehran, Iran
[2] Shahid Sadoughi Univ Med Sci, Sch Med, Dept Med Biotechnol, Yazd, Iran
[3] Shahid Sadoughi Univ Med Sci, Yazd Reprod Sci Inst, Med Nanotechnol & Tissue Engn Res Ctr, Yazd, Iran
[4] Shahid Sadoughi Univ Med Sci, Yazd Reprod Sci Inst, Stem Cell Biol Res Ctr, Yazd, Iran
[5] AI VIVO Ltd, Bioinnovat Ctr, Cambridge, England
[6] Univ Cambridge, Inst Syst Biol, Genet Dept, Cambridge, England
[7] Univ Tehran Med Sci, Shariati Hosp, Dept Pathol, Tehran, Iran
关键词
single-cell sequencing; transcriptome analysis; pancreas biology; pancreas cancer; genetic heterogeneity; GENE-EXPRESSION; MOUSE;
D O I
10.3389/fgene.2023.1029758
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Single-cell sequencing has become one of the most used techniques across the wide field of biology. It has enabled researchers to investigate the whole transcriptome at the cellular level across tissues, which unlocks numerous potentials for basic and applied studies in future diagnosis and therapy. Here, we review the impact of single-cell RNA sequencing, as the prominent single-cell technique, in pancreatic biology and cancer. We discuss the most recent findings about pancreatic physiology and pathophysiology owing to this technological advancement in the past few years. Using single-cell RNA sequencing, researchers have been able to discover cellular heterogeneity across healthy cell types, as well as cancer tissues of the pancreas. We will discuss the new immunological targets and new molecular mechanisms of progression in the microenvironment of pancreatic cancer studied using single-cell RNA sequencing. The scope is not limited to cancer tissues, and we cover novel developmental, evolutionary, physiological, and heterogenic insights that have also been achieved recently for pancreatic tissues. We cover all biological insights derived from the single-cell RNA sequencing data, discuss the corresponding pros and cons, and finally, conclude how future research can move better by utilizing single-cell analysis for pancreatic biology.
引用
收藏
页数:11
相关论文
共 50 条
  • [1] A Single-Cell Transcriptome Atlas of the Human Pancreas
    Muraro, Mauro J.
    Dharmadhikari, Gitanjali
    Gruen, Dominic
    Groen, Nathalie
    Dielen, Tim
    Jansen, Erik
    van Gurp, Leon
    Engelse, Marten A.
    Carlotti, Francoise
    de Koning, Eelco J. P.
    van Oudenaarden, Alexander
    CELL SYSTEMS, 2016, 3 (04) : 385 - +
  • [2] Applications of single-cell sequencing in cancer research: progress and perspectives
    Lei, Yalan
    Tang, Rong
    Xu, Jin
    Wang, Wei
    Zhang, Bo
    Liu, Jiang
    Yu, Xianjun
    Shi, Si
    JOURNAL OF HEMATOLOGY & ONCOLOGY, 2021, 14 (01)
  • [3] Recent progress and applications of single-cell sequencing technology in breast cancer
    Hawsawi, Yousef M.
    Khoja, Basmah
    Aljaylani, Abdullah Omar
    Jaha, Raniah
    Alderbi, Rasha Mohammed
    Alnuman, Huda
    Khan, Mohammed I.
    FRONTIERS IN GENETICS, 2024, 15
  • [4] Single-cell transcriptome and accessible chromatin dynamics during endocrine pancreas development
    Duvall, Eliza
    Benitez, Cecil M.
    Tellez, Krissie
    Enge, Martin
    Pauerstein, Philip T.
    Li, Lingyu
    Baek, Songjoon
    Quake, Stephen R.
    Smith, Jason P.
    Sheffield, Nathan C.
    Kim, Seung K.
    Arda, H. Efsun
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2022, 119 (26)
  • [5] Research progress of single-cell transcriptome sequencing in autoimmune diseases and autoinflammatory disease: A review
    Zeng, Liuting
    Yang, Kailin
    Zhang, Tianqing
    Zhu, Xiaofei
    Hao, Wensa
    Chen, Hua
    Ge, Jinwen
    JOURNAL OF AUTOIMMUNITY, 2022, 133
  • [6] Deciphering the adult brain development complexity by single-cell transcriptome analysis-a review
    Mehmood, S.
    Bilal, M.
    Manzoor, R.
    Iqbal, H. M. N.
    MATERIALS TODAY CHEMISTRY, 2019, 13 : 88 - 97
  • [7] Research Progress of Single-Cell Transcriptome Sequencing Technology in Plants
    Bian, Jianwen
    Zhuang, Zelong
    Ji, Xiangzhuo
    Tang, Rui
    Li, Jiawei
    Chen, Jiangtao
    Li, Zhiming
    Peng, Yunling
    AGRONOMY-BASEL, 2024, 14 (11):
  • [8] SINGLE-CELL TRANSCRIPTOME ANALYSIS IN HEALTH AND DISEASE
    Bhattachan, Punit
    Jeschke, Marc G.
    SHOCK, 2024, 61 (01): : 19 - 27
  • [9] Development and applications of single-cell transcriptome analysis
    Tang, Fuchou
    Lao, Kaiqin
    Surani, M. Azim
    NATURE METHODS, 2011, 8 (04) : S6 - S11
  • [10] A PDX1 cistrome and single-cell transcriptome resource of the developing pancreas
    Yang, Xiaodun
    Raum, Jeffrey C.
    Kim, Junil
    Yu, Reynold
    Yang, Juxiang
    Rice, Gabriella
    Li, Changhong
    Won, Kyoung-Jae
    Stanescu, Diana E.
    Stoffers, Doris A.
    DEVELOPMENT, 2022, 149 (13):