Exploring oncogenes for renal clear cell carcinoma based on G protein-coupled receptor-associated genes

被引:15
|
作者
Zhu, Chengcun [1 ]
Sun, Zhou [3 ]
Wang, Jie [3 ,4 ]
Meng, Xiangdi [3 ]
Ma, Zhaosen [3 ]
Guo, Rui [3 ]
Niu, Jiqiang [3 ]
Tran, Lisa Jia [5 ]
Zhang, Jing [6 ]
Jiang, Tianxiao [5 ]
Liu, Yunfei [5 ]
Ye, Fangdie [7 ]
Ma, Baoluo [2 ,3 ]
机构
[1] First Peoples Hosp Jiangxia Dist, Dept Urol, Wuhan 430200, Hubei, Peoples R China
[2] Affiliated Hosp Hubei Univ Arts & Sci, Xiangyang Cent Hosp, Dept Urol, Xiangyang, Hubei, Peoples R China
[3] Jilin Univ, China Japan Union Hosp, Dept Urol, Changchun 130000, Jilin, Peoples R China
[4] Second Peoples Hosp Meishan City, Dept Urol, Meishan, Sichuan, Peoples R China
[5] Ludwig Maximilians Univ Munchen, Dept Gen Visceral & Transplant Surg, D-81377 Munich, Germany
[6] Univ South Dakota, Sanford Sch Med, Div Basic Biomed Sci, Vermillion, SD 57069 USA
[7] Fudan Univ, Huashan Hosp, Dept Urol, Shanghai, Peoples R China
关键词
Clear cell renal cell carcinoma; G protein-coupled receptors; TCGA; Transcriptome profiling; Single cell RNA sequencing; Survival analysis; Tumor microenvironment; CANCER; TUMORS;
D O I
10.1007/s12672-023-00795-z
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
G protein-coupled receptors (GPCRs) are a class of receptors on cell membranes that regulate various biological processes in cells, such as cell proliferation, differentiation, migration, apoptosis, and metabolism, by interacting with G proteins. However, the role of G protein-coupled receptors in predicting the prognosis of renal clear cell carcinoma is still unknown. The transcriptome data and clinical profiles of renal clear cell carcinoma patients, were downloaded from TCGA databases, and the validation group data were downloaded from number GSE167573, including 63 tumor samples and 14 normal samples. Single-cell RNA sequencing data were downloaded from the GEO database, No. GSE152938 and selected samples were used for GSEA enrichment analysis, WGCNA subgroup analysis, single-cell data analysis, and mutation analysis to explore the role of G protein-coupled receptor-related genes in the diagnosis and prognosis of renal clear cell carcinoma and to verify their reliability with cellular experiments. Finally, this study establishes a disease model based on G protein-coupled receptor-related genes, which may help to propose targeted therapeutic regimens in different strata of renal cell carcinoma patients.Author names: Please confirm if the author names are presented accurately and in the correct sequence (given name, middle name/initial, family name). Author: Given name [Lisa Jia] Last name [Tran].It's ok!
引用
收藏
页数:15
相关论文
共 50 条
  • [31] G Protein γ subunit 7 loss contributes to progression of clear cell renal cell carcinoma
    Xu, Shan
    Zhang, Haibao
    Liu, Tianjie
    Chen, Yule
    He, Dalin
    Li, Lei
    JOURNAL OF CELLULAR PHYSIOLOGY, 2019, 234 (11) : 20002 - 20012
  • [32] Exploring the physiological role of the G protein-coupled estrogen receptor (GPER) and its associations with human diseases
    Zabinska, Magdalena
    Wisniewska, Karolina
    Wegrzyn, Grzegorz
    Pierzynowska, Karolina
    PSYCHONEUROENDOCRINOLOGY, 2024, 166
  • [33] Identification of Novel Genes and Associated Drugs in Advanced Clear Cell Renal Cell Carcinoma by Bioinformatic Methods
    Lu, Meiqi
    Xiao, Liangxiang
    Xu, Bo
    Gao, Qing
    TOHOKU JOURNAL OF EXPERIMENTAL MEDICINE, 2022, 258 (02) : 79 - 90
  • [34] A novel prognostic model based on six methylation-driven genes predicts overall survival for patients with clear cell renal cell carcinoma
    Zhou, Hongmin
    Xie, Tiancheng
    Gao, Yuchen
    Zhan, Xiangcheng
    Dong, Yunze
    Liu, Ding
    Xu, Yunfei
    FRONTIERS IN GENETICS, 2022, 13
  • [35] Co-expression Network Analysis Identifies Fourteen Hub Genes Associated with Prognosis in Clear Cell Renal Cell Carcinoma
    Chen, Jia-yi
    Sun, Yan
    Qiao, Nan
    Ge, Yang-yang
    Li, Jian-hua
    Lin, Yun
    Yao, Shang-long
    CURRENT MEDICAL SCIENCE, 2020, 40 (04) : 773 - 785
  • [36] G Protein-Coupled Estrogen Receptor Regulates Actin Cytoskeleton Dynamics to Impair Cell Polarization
    Lachowski, Dariusz
    Cortes, Ernesto
    Matellan, Carlos
    Rice, Alistair
    Lee, David A.
    Thorpe, Stephen D.
    del Rio Hernandez, Armando E.
    FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY, 2020, 8
  • [37] Identification of subtypes of clear cell renal cell carcinoma and construction of a prognostic model based on fatty acid metabolism genes
    Nie, Shiwen
    Huili, Youlong
    Yao, Anliang
    Liu, Jian
    Wang, Yong
    Wang, Lei
    Zhang, Liguo
    Kang, Shaosan
    Cao, Fenghong
    FRONTIERS IN GENETICS, 2022, 13
  • [38] FTO mRNA expression in the lower quartile is associated with bad prognosis in clear cell renal cell carcinoma based on TCGA data mining
    Wen, Lijie
    Yu, Yang
    Lv, Hang
    He, Yi
    Yang, Bo
    ANNALS OF DIAGNOSTIC PATHOLOGY, 2019, 38 : 1 - 5
  • [39] Increased expression of ALDH1A1 protein is associated with poor prognosis in clear cell renal cell carcinoma
    Wang, Kefeng
    Chen, Xiaonan
    Zhan, Yunhong
    Jiang, Weiguo
    Liu, Xuefeng
    Wang, Xia
    Wu, Bin
    MEDICAL ONCOLOGY, 2013, 30 (02)
  • [40] Identification of Novel Glycolysis-Related Gene Signatures Associated With Prognosis of Patients With Clear Cell Renal Cell Carcinoma Based on TCGA
    Wu, Chengjiang
    Cai, Xiaojie
    Yan, Jie
    Deng, Anyu
    Cao, Yun
    Zhu, Xueming
    FRONTIERS IN GENETICS, 2020, 11