Biomarkers and molecular endotypes of sarcoidosis: lessons from omics and non-omics studies

被引:2
作者
Ji, Hong-Long [1 ,2 ]
Xi, Nan Mile S. [3 ]
Mohan, Chandra [4 ]
Yan, Xiting [5 ]
Jain, Krishan G. [1 ,2 ]
Zang, Qun Sophia [1 ,2 ]
Gahtan, Vivian [1 ,2 ]
Zhao, Runzhen [1 ,2 ]
机构
[1] Loyola Univ Chicago, Burn & Shock Trauma Res Inst, Stritch Sch Med, Hlth Sci Div, Maywood, IL 60660 USA
[2] Loyola Univ Chicago, Stritch Sch Med, Dept Surg, Hlth Sci Div, Maywood, IL 60660 USA
[3] Loyola Univ Chicago, Dept Math & Stat, Chicago, IL USA
[4] Univ Houston, Biomed Engn & Med, Houston, TX USA
[5] Yale Sch Med, Yale New Haven Hosp, Dept Med, Div Pulm Crit Care & Sleep Med, New Haven, CT 06511 USA
来源
FRONTIERS IN IMMUNOLOGY | 2024年 / 14卷
关键词
sarcoidosis; biomarker; endotype; omics; machine learning algorithms; SOLUBLE INTERLEUKIN-2-RECEPTOR LEVEL; BRONCHOALVEOLAR LAVAGE FLUID; URINARY 8-HYDROXY-2'-DEOXYGUANOSINE; ALVEOLAR MACROPHAGES; PULMONARY-FIBROSIS; SERUM BIOMARKER; GENE-EXPRESSION; DIAGNOSIS; PROTEOMICS; MARKERS;
D O I
10.3389/fimmu.2023.1342429
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
Sarcoidosis is a chronic granulomatous disorder characterized by unknown etiology, undetermined mechanisms, and non-specific therapies except TNF blockade. To improve our understanding of the pathogenicity and to predict the outcomes of the disease, the identification of new biomarkers and molecular endotypes is sorely needed. In this study, we systematically evaluate the biomarkers identified through Omics and non-Omics approaches in sarcoidosis. Most of the currently documented biomarkers for sarcoidosis are mainly identified through conventional "one-for-all" non-Omics targeted studies. Although the application of machine learning algorithms to identify biomarkers and endotypes from unbiased comprehensive Omics studies is still in its infancy, a series of biomarkers, overwhelmingly for diagnosis to differentiate sarcoidosis from healthy controls have been reported. In view of the fact that current biomarker profiles in sarcoidosis are scarce, fragmented and mostly not validated, there is an urgent need to identify novel sarcoidosis biomarkers and molecular endotypes using more advanced Omics approaches to facilitate disease diagnosis and prognosis, resolve disease heterogeneity, and facilitate personalized medicine.
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页数:12
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