The complete chloroplast genome of Elephantopus scaber L. (Vernonioideae, Asteraceae), a useful ethnomedicinal plant in asia

被引：4

作者：

Nguyen, Pham Anh Thi ^{[1
]}

Khang, Do Tan ^{[1
]}

Nguyen, Pham Thien Trang ^{[1
]}

Do, Hoang Dang Khoa ^{[2
]}

机构：

[1] Can Tho Univ, Inst Food & Biotechnol, Dept Mol Biol, Can Tho, Vietnam

[2] Nguyen Tat Thanh Univ, NTT Hitech Inst, Ho Chi Minh City, Vietnam

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2023年 / 8卷 / 09期

关键词：

Cichorioideae; plastome; phylogeny; Vernonieae; Vernonioideae; PHYLOGENETIC ANALYSIS; SEQUENCE;

D O I：

10.1080/23802359.2023.2252944

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Elephantopus scaber L. is a useful medicinal plant and has been used as a traditional medicine for various diseases in Asia. In this study, we completed and characterized the chloroplast genome of E. scaber of which the length was 152,375 bp. This circular genome had a large-single copy (LSC, 83,520 bp), a small-single copy (SSC, 18,523 bp), and two inverted repeat regions (IR, 25,166 bp). There were 80 protein-coding genes, 30 tRNA genes, and four rRNA genes in the chloroplast genome of E. scaber. Phylogenetic analysis inferred from 80 protein-coding regions revealed a close relationship between E. scaber and Cyanthillium cinereum (L.) H.Rob. and a sister relationship between Vernonioideae and Cichorioideae subfamilies. The genomic data of E. scaber provide useful information to explore the molecular evolution of not only Elephantopus genus but also the Asteraceae family.

引用

页码：936 / 941

页数：6

共 60 条

[1] Effect of Elephantopus Scaber Linn. leaf extract on mouse immune system [J].

Aldi, Yufri ;

Megaraswita ;

Dillasamola, Dwisari .

TROPICAL JOURNAL OF PHARMACEUTICAL RESEARCH, 2019, 18 (10) :2045-2050

[2]

[Anonymous], 2020, CTU J. of Inn. Sus. Dev, V12, P9, DOI [10.22144/ctu.jen.2020.010, DOI 10.22144/CTU.JEN.2020.010]

[3] Revisions and key to the Vernonieae (Compositae) of Thailand [J].

Bunwong, Sukhonthip ;

Chantaranothai, Pranom ;

Keeley, Sterling C. .

PHYTOKEYS, 2014, 37 :25-101

[4] Deoxyelephantopin from Elephantopus scaber Inhibits HCT116 Human Colorectal Carcinoma Cell Growth through Apoptosis and Cell Cycle Arrest [J].

Chan, Chim Kei ;

Chan, Gomathi ;

Awang, Khalijah ;

Kadir, Habsah Abdul .

MOLECULES, 2016, 21 (03)

[5] Elephantopus scaber induces apoptosis through ROS-dependent mitochondrial signaling pathway in HCT116 human colorectal carcinoma cells [J].

Chan, Chim Kei ;

Supriady, Hadi ;

Goh, Bey Hing ;

Kadir, Habsah Abdul .

JOURNAL OF ETHNOPHARMACOLOGY, 2015, 168 :291-304

[6] Plastid Phylogenomics of Dendroseris (Cichorieae; Asteraceae): Insights Into Structural Organization and Molecular Evolution of an Endemic Lineage From the Juan Fernandez Islands [J].

Cho, Myong-Suk ;

Kim, Seon-Hee ;

Yang, JiYoung ;

Crawford, Daniel J. ;

Stuessy, Tod F. ;

Lopez-Sepulveda, Patricio ;

Kim, Seung-Chul .

FRONTIERS IN PLANT SCIENCE, 2020, 11

[7] The complete chloroplast genome of Cynara humilis [J].

Curci, Pasquale Luca ;

Sonnante, Gabriella .

MITOCHONDRIAL DNA PART A, 2016, 27 (04) :2345-2346

[8] Chloroplast genomes: diversity, evolution, and applications in genetic engineering [J].

Daniell, Henry ;

Lin, Choun-Sea ;

Yu, Ming ;

Chang, Wan-Jung .

GENOME BIOLOGY, 2016, 17

[9]

Dann M, 2017, bioRxiv, DOI [10.1101/156398, 10.1101/156398, DOI 10.1101/156398]

[10] jModelTest 2: more models, new heuristics and parallel computing [J].

Darriba, Diego ;

Taboada, Guillermo L. ;

Doallo, Ramon ;

Posada, David .

NATURE METHODS, 2012, 9 (08) :772-772

← 1 2 3 4 5 6 →