Calculating 13C NMR chemical shifts of large molecules using the eXtended ONIOM method at high accuracy with a low cost

被引:1
作者
Ke, Zhipeng [1 ,2 ]
Weng, Jingwei [2 ]
Xu, Xin [2 ,3 ,4 ]
机构
[1] Univ Shanghai Sci & Technol, Inst Photochem & Photofunct Mat, Shanghai, Peoples R China
[2] Fudan Univ, Collaborat Innovat Ctr Chem Energy Mat, Dept Chem, Minist Educ,Shanghai Key Lab Mol Catalysis & Inno, Shanghai, Peoples R China
[3] Hefei Natl Lab, Hefei, Peoples R China
[4] Fudan Univ, Collaborat Innovat Ctr Chem Energy Mat, Dept Chem, Shanghai Key Lab Mole Catalysis & Innovat Mat,Mini, Shanghai 200433, Peoples R China
基金
中国国家自然科学基金;
关键词
DFT; fragmentation-based method; NMR; ONIOM; XO; ORBITAL METHODS; FRAGMENTATION; ENERGY; APPROXIMATION; EXCHANGE; SYSTEMS; XO;
D O I
10.1002/jcc.27201
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Fragmentation-based methods for nuclear magnetic resonance (NMR) chemical shift calculations have become more and more popular in first-principles calculations of large molecules. However, there are many options for a fragmentation-based method to select, such as theoretical methods, fragmentation schemes, the number of levels of theory, etc. It is important to study the optimal combination of the options to achieve a good balance between accuracy and efficiency. Here we investigate different combinations of options used by a fragmentation-based method, the eXtended ONIOM (XO) method, for C-13 chemical shift calculations on a set of organic and biological molecules. We found that: (1) introducing Hartree-Fock exchange into density functional theory (DFT) could reduce the calculation error due to fragmentation in contrast to pure DFT functionals, while a hybrid functional, xOPBE, is generally recommended; (2) fragmentation schemes generated from the molecular tailoring approach (MTA) with small level parameter n, for example, n = 2 and the degree-based fragmentation method (DBFM) with n = 1, are sufficient to achieve satisfactory accuracy; (3) the two-level XO (XO2) NMR calculation is superior to the calculation with only one level of theory, as the second level (i.e., low level) of theory provides a way to well describe the long-range effect. These findings are beneficial to practical applications of fragmentation-based methods for NMR chemical shift calculations of large molecules.
引用
收藏
页码:2347 / 2357
页数:11
相关论文
共 50 条
  • [1] Computational protocols for calculating 13C NMR chemical shifts
    Krivdin, Leonid B.
    PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY, 2019, 112 : 103 - 156
  • [2] Evaluating the accuracy of density functional theory for calculating 1H and 13C NMR chemical shifts in drug molecules
    Hill, David E.
    Vasdev, Neil
    Holland, Jason P.
    COMPUTATIONAL AND THEORETICAL CHEMISTRY, 2015, 1051 : 161 - 172
  • [3] Quantitative prediction of 13C NMR chemical shifts in solvent using PCM-ONIOM method and optimally selected wave function
    Shaghaghi, Hoora
    Fathi, Fariba
    Ebrahimi, Hossein Pasha
    Tafazzoli, Mohsen
    CONCEPTS IN MAGNETIC RESONANCE PART A, 2013, 42 (01) : 1 - 13
  • [4] Density functional theory on 13C NMR chemical shifts of fullerene
    Christy, P. Anto
    Peter, A. John
    Lee, Chang Woo
    SOLID STATE COMMUNICATIONS, 2018, 283 : 22 - 26
  • [5] Layer selection effect on solid state 13C and 15N chemical shifts calculation using ONIOM approach
    Shaghaghi, Hoora
    Ebrahimi, Hossein Pasha
    Panah, Niloufar Bahrami
    Tafazzoli, Mohsen
    SOLID STATE NUCLEAR MAGNETIC RESONANCE, 2013, 51-52 : 31 - 36
  • [6] Quantum-chemical calculations of NMR chemical shifts of organic molecules: XII. Calculation of the 13C NMR chemical shifts of fluoromethanes at the DFT level
    Fedorov, S. V.
    Rusakov, Yu Yu
    Krivdin, L. B.
    RUSSIAN JOURNAL OF ORGANIC CHEMISTRY, 2014, 50 (02) : 160 - 164
  • [7] Novel estimation of lipophilicity using 13C NMR chemical shifts as molecular descriptor
    Khadikar, PV
    Sharma, V
    Varma, RG
    BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 2005, 15 (02) : 421 - 425
  • [8] Structural factors affecting 13C NMR chemical shifts of cellulose: a computational study
    Yang, Hui
    Wang, Tuo
    Oehme, Daniel
    Petridis, Loukas
    Hong, Mei
    Kubicki, James D.
    CELLULOSE, 2018, 25 (01) : 23 - 36
  • [9] Structural factors affecting 13C NMR chemical shifts of cellulose: a computational study
    Hui Yang
    Tuo Wang
    Daniel Oehme
    Loukas Petridis
    Mei Hong
    James D. Kubicki
    Cellulose, 2018, 25 : 23 - 36
  • [10] Quantitative analysis of deuterium using the isotopic effect on quaternary 13C NMR chemical shifts
    Darwish, Tamim A.
    Yepuri, Nageshwar Rao
    Holden, Peter J.
    James, Michael
    ANALYTICA CHIMICA ACTA, 2016, 927 : 89 - 98