Cuproptosis-related lncRNAs predict the prognosis and immune response in hepatocellular carcinoma

被引:11
|
作者
Zhang, Qiongyue [1 ]
Huang, Yan [1 ]
Xia, Yu [2 ]
Liu, Yumeng [1 ]
Gan, Jianhe [1 ]
机构
[1] Soochow Univ, Dept Infect Dis, Affiliated Hosp 1, Suzhou 215006, Jiangsu, Peoples R China
[2] Soochow Univ, Dept Orthopaed, Affiliated Hosp 1, Suzhou 215006, Peoples R China
关键词
Hepatocellular carcinoma; Cuproptosis; Long noncoding RNA; Immune infiltration; Prognosis; Tumor mutation burden; SERUM-LEVELS; TRACE-ELEMENTS; CANCER; RISK;
D O I
10.1007/s10238-022-00892-3
中图分类号
R-3 [医学研究方法]; R3 [基础医学];
学科分类号
1001 ;
摘要
Cuproptosis has been recently used to indicate unique biological processes triggered by Cu action as a new term. This study aimed to explore the relationship between cuproptosis-related lncRNA and hepatocellular carcinoma (HCC) with regard to immunity and prognosis. RNA sequencing and the clinical data were downloaded from the TCGA database. The cuproptosis-related genes were sorted out through literature study. The cuproptosis-related IncRNA signature was identified by Cox regression analysis and the least absolute shrinkage and selection operator analysis. The K-M survival analysis, receiver operating characteristic analysis, and C-index analysis were adopted to evaluate the prognostic prediction performance of the signature. The functional enrichment, immune infiltration and tumor mutation analysis were further analyzed. Subsequently, we predicted the differences in chemosensitivity from tumor gene expression levels for some chemotherapy drugs. The prognostic signature consisting of 5 overall survival-related CUPlncRNAs. It showed an extraordinary ability to predict the prognoses of patients with HCC. The signature can predict the abundance of immune cell infiltration, immune functions, expression of immune checkpoint inhibitors, m6A genes, which was supported by the GO biological process and KEGG analysis. And it may also have a guiding effect in the sensitivity of different chemotherapeutic drugs and tumor mutation burden. We constructed a new cuproptosis-related lncRNA signature for HCC patients. The model can be used for prognostic prediction and immune evaluation, providing a reference for immunotherapies and targeted therapies.
引用
收藏
页码:2051 / 2064
页数:14
相关论文
共 50 条
  • [1] Cuproptosis-related lncRNAs predict the prognosis and immune response in hepatocellular carcinoma
    Qiongyue Zhang
    Yan Huang
    Yu Xia
    Yumeng Liu
    Jianhe Gan
    Clinical and Experimental Medicine, 2023, 23 : 2051 - 2064
  • [2] Cuproptosis-related lncRNAs predict the clinical outcome and immune characteristics of hepatocellular carcinoma
    Zhu, Hongfei
    Mao, Feifei
    Wang, Kang
    Feng, Jinkai
    Cheng, Shuqun
    FRONTIERS IN GENETICS, 2022, 13
  • [3] Cuproptosis-related lncRNAs predict prognosis and immune response of thyroid carcinoma
    Shi, Yinli
    Sheng, Pei
    Guo, Ming
    Chen, Kai
    Zhou, Hongguang
    Wu, Mianhua
    Li, Wenting
    Li, Bo
    FRONTIERS IN GENETICS, 2023, 14
  • [4] Comprehensive analysis of cuproptosis-related lncRNAs in immune infiltration and prognosis in hepatocellular carcinoma
    Liu, Chunhua
    Wu, Simin
    Lai, Liying
    Liu, Jinyu
    Guo, Zhaofu
    Ye, Zegen
    Chen, Xiang
    BMC BIOINFORMATICS, 2023, 24 (01)
  • [5] Identification of Cuproptosis-Related Patterns Predict Prognosis and Immunotherapy Response in Hepatocellular Carcinoma
    Guo, Kai
    Wang, Tianbing
    Yin, Jimin
    Yang, Shoushan
    Cui, Haodong
    Cao, Zichuan
    Zhao, Qiang
    Xie, Gongbo
    Lu, Jian
    Gu, Guosheng
    Wu, Wenyong
    JOURNAL OF CELLULAR AND MOLECULAR MEDICINE, 2024, 28 (23)
  • [6] Comprehensive analysis of cuproptosis-related lncRNAs in immune infiltration and prognosis in hepatocellular carcinoma
    Chunhua Liu
    Simin Wu
    Liying Lai
    Jinyu Liu
    Zhaofu Guo
    Zegen Ye
    Xiang Chen
    BMC Bioinformatics, 24
  • [7] Comprehensive analysis of cuproptosis-related lncRNAs to predict prognosis and immune infiltration characteristics in colorectal cancer
    Zhu, Zhonglin
    Zhao, Qiuyan
    Li, Shanbao
    Weng, Junyong
    Guo, Tianan
    Zhu, Congcong
    Xu, Ye
    FRONTIERS IN GENETICS, 2022, 13
  • [8] Identification of cuproptosis-related lncRNAs to predict prognosis and immune infiltration characteristics in alimentary tract malignancies
    Xie, Yangyang
    Song, Xue
    Du, Danwei
    Ni, Zhongkai
    Huang, Hai
    BMC BIOINFORMATICS, 2023, 24 (01)
  • [9] Cuproptosis-related immune checkpoint gene signature: Prediction of prognosis and immune response for hepatocellular carcinoma
    Cong, Tianhao
    Luo, Yingen
    Liu, Yu
    Yang, Chao
    Yang, Hongcai
    Li, Yujie
    Li, Jingui
    Li, Xiao
    FRONTIERS IN GENETICS, 2022, 13
  • [10] Identification of cuproptosis-related lncRNAs to predict prognosis and immune infiltration characteristics in alimentary tract malignancies
    Yangyang Xie
    Xue Song
    Danwei Du
    Zhongkai Ni
    Hai Huang
    BMC Bioinformatics, 24