Role of AI and digital pathology for colorectal immuno-oncology

被引:12
作者
Bilal, Mohsin [1 ]
Nimir, Mohammed [2 ]
Snead, David [2 ,3 ]
Taylor, Graham S. [4 ]
Rajpoot, Nasir [1 ,2 ,5 ]
机构
[1] Univ Warwick, Dept Comp Sci, Tissue Image Analyt Ctr, Coventry, W Midlands, England
[2] Univ Hosp Coventry & Warwickshire NHS Trust, Dept Pathol, Coventry, W Midlands, England
[3] Univ Warwick, Warwick Med Sch, Coventry, W Midlands, England
[4] Univ Birmingham, Inst Immunol & Immunotherapy, Birmingham, W Midlands, England
[5] Alan Turing Inst, London, England
关键词
MICROSATELLITE INSTABILITY; COLON-CANCER; LYMPHOCYTES; CARCINOMAS; PREDICTION; MODEL;
D O I
10.1038/s41416-022-01986-1
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Immunotherapy deals with therapeutic interventions to arrest the progression of tumours using the immune system. These include checkpoint inhibitors, T-cell manipulation, cytokines, oncolytic viruses and tumour vaccines. In this paper, we present a survey of the latest developments on immunotherapy in colorectal cancer (CRC) and the role of artificial intelligence (AI) in this context. Among these, microsatellite instability (MSI) is perhaps the most popular IO biomarker globally. We first discuss the MSI status of tumours, its implications for patient management, and its relationship to immune response. In recent years, several aspiring studies have used AI to predict the MSI status of patients from digital whole-slide images (WSIs) of routine diagnostic slides. We present a survey of AI literature on the prediction of MSI and tumour mutation burden from digitised WSIs of haematoxylin and eosin-stained diagnostic slides. We discuss AI approaches in detail and elaborate their contributions, limitations and key takeaways to drive future research. We further expand this survey to other IO-related biomarkers like immune cell infiltrates and alternate data modalities like immunohistochemistry and gene expression. Finally, we underline possible future directions in immunotherapy for CRC and promise of AI to accelerate this exploration for patient benefits.
引用
收藏
页码:3 / 11
页数:9
相关论文
共 81 条
  • [1] Computational pathology definitions, best practices, and recommendations for regulatory guidance: a white paper from the Digital Pathology Association
    Abels, Esther
    Pantanowitz, Liron
    Aeffner, Famke
    Zarella, Mark D.
    van der Laak, Jeroen
    Bui, Marilyn M.
    Vemuri, Venkata N. P.
    Parwani, Anil V.
    Gibbs, Jeff
    Agosto-Arroyo, Emmanuel
    Beck, Andrew H.
    Kozlowski, Cleopatra
    [J]. JOURNAL OF PATHOLOGY, 2019, 249 (03) : 286 - 294
  • [2] Evolutionary genetic algorithm identifies IL2RB as a potential predictive biomarker for immune-checkpoint therapy in colorectal cancer
    Alderdice, Matthew
    Craig, Stephanie G.
    Humphries, Matthew P.
    Gilmore, Alan
    Johnston, Nicole
    Bingham, Victoria
    Coyle, Vicky
    Senevirathne, Seedevi
    Longley, Daniel B.
    Loughrey, Maurice B.
    McQuaid, Stephen
    James, Jacqueline A.
    Salto-Tellez, Manuel
    Lawler, Mark
    McArt, Darragh G.
    [J]. NAR GENOMICS AND BIOINFORMATICS, 2021, 3 (02)
  • [3] Signatures of mutational processes in human cancer
    Alexandrov, Ludmil B.
    Nik-Zainal, Serena
    Wedge, David C.
    Aparicio, Samuel A. J. R.
    Behjati, Sam
    Biankin, Andrew V.
    Bignell, Graham R.
    Bolli, Niccolo
    Borg, Ake
    Borresen-Dale, Anne-Lise
    Boyault, Sandrine
    Burkhardt, Birgit
    Butler, Adam P.
    Caldas, Carlos
    Davies, Helen R.
    Desmedt, Christine
    Eils, Roland
    Eyfjord, Jorunn Erla
    Foekens, John A.
    Greaves, Mel
    Hosoda, Fumie
    Hutter, Barbara
    Ilicic, Tomislav
    Imbeaud, Sandrine
    Imielinsk, Marcin
    Jaeger, Natalie
    Jones, David T. W.
    Jones, David
    Knappskog, Stian
    Kool, Marcel
    Lakhani, Sunil R.
    Lopez-Otin, Carlos
    Martin, Sancha
    Munshi, Nikhil C.
    Nakamura, Hiromi
    Northcott, Paul A.
    Pajic, Marina
    Papaemmanuil, Elli
    Paradiso, Angelo
    Pearson, John V.
    Puente, Xose S.
    Raine, Keiran
    Ramakrishna, Manasa
    Richardson, Andrea L.
    Richter, Julia
    Rosenstiel, Philip
    Schlesner, Matthias
    Schumacher, Ton N.
    Span, Paul N.
    Teague, Jon W.
    [J]. NATURE, 2013, 500 (7463) : 415 - +
  • [4] Andre Thierry, 2022, Am Soc Clin Oncol Educ Book, V42, P1, DOI 10.1200/EDBK_349557
  • [5] Comprehensive molecular characterization of human colon and rectal cancer
    Muzny, Donna M.
    Bainbridge, Matthew N.
    Chang, Kyle
    Dinh, Huyen H.
    Drummond, Jennifer A.
    Fowler, Gerald
    Kovar, Christie L.
    Lewis, Lora R.
    Morgan, Margaret B.
    Newsham, Irene F.
    Reid, Jeffrey G.
    Santibanez, Jireh
    Shinbrot, Eve
    Trevino, Lisa R.
    Wu, Yuan-Qing
    Wang, Min
    Gunaratne, Preethi
    Donehower, Lawrence A.
    Creighton, Chad J.
    Wheeler, David A.
    Gibbs, Richard A.
    Lawrence, Michael S.
    Voet, Douglas
    Jing, Rui
    Cibulskis, Kristian
    Sivachenko, Andrey
    Stojanov, Petar
    McKenna, Aaron
    Lander, Eric S.
    Gabriel, Stacey
    Getz, Gad
    Ding, Li
    Fulton, Robert S.
    Koboldt, Daniel C.
    Wylie, Todd
    Walker, Jason
    Dooling, David J.
    Fulton, Lucinda
    Delehaunty, Kim D.
    Fronick, Catrina C.
    Demeter, Ryan
    Mardis, Elaine R.
    Wilson, Richard K.
    Chu, Andy
    Chun, Hye-Jung E.
    Mungall, Andrew J.
    Pleasance, Erin
    Robertson, A. Gordon
    Stoll, Dominik
    Balasundaram, Miruna
    [J]. NATURE, 2012, 487 (7407) : 330 - 337
  • [6] Recent Advances on Immune Targeted Therapy of Colorectal Cancer Using bi-Specific Antibodies and Therapeutic Vaccines
    Azadi, Ali
    Golchini, Alireza
    Delazar, Sina
    Abarghooi Kahaki, Fatemeh
    Dehnavi, Seyed Mohsen
    Payandeh, Zahra
    Eyvazi, Shirin
    [J]. BIOLOGICAL PROCEDURES ONLINE, 2021, 23 (01)
  • [7] Difference Between Left-Sided and Right-Sided Colorectal Cancer: A Focused Review of Literature
    Baran, Burcin
    Ozupek, Nazli Mert
    Tetik, Nihal Yerli
    Acar, Emine
    Bekcioglu, Omer
    Baskin, Yasemin
    [J]. GASTROENTEROLOGY RESEARCH, 2018, 11 (04) : 264 - 273
  • [8] Comprehensive Outline of Whole Exome Sequencing Data Analysis Tools Available in Clinical Oncology
    Bartha, Aron
    Gyorffy, Balazs
    [J]. CANCERS, 2019, 11 (11)
  • [9] DNA mismatch repair proteins: scientific update and practical guide
    Bateman, Adrian C.
    [J]. JOURNAL OF CLINICAL PATHOLOGY, 2021, 74 (04) : 264 - 268
  • [10] Cytokines in clinical cancer immunotherapy
    Berraondo, Pedro
    Sanmamed, Miguel F.
    Ochoa, Maria C.
    Etxeberria, Inaki
    Aznar, Maria A.
    Luis Perez-Gracia, Jose
    Rodriguez-Ruiz, Maria E.
    Ponz-Sarvise, Mariano
    Castanon, Eduardo
    Melero, Ignacio
    [J]. BRITISH JOURNAL OF CANCER, 2019, 120 (01) : 6 - 15