Pre-Training, Transfer Learning and Pretext Learning for a Convolutional Neural Network Applied to Automated Assessment of Clinical PET Image Quality

被引:7
作者
Hopson, Jessica B. [1 ]
Neji, Radhouene [4 ]
Dunn, Joel T. [2 ,3 ]
McGinnity, Colm J. [2 ,3 ]
Flaus, Anthime [2 ,3 ]
Reader, Andrew J.
Hammers, Alexander [2 ,3 ]
机构
[1] Kings Coll London, Dept Biomed Engn, London SE1 7EH, England
[2] Kings Coll London, London SE1 7EH, England
[3] Kings Coll London, Guys & St Thomas PET Ctr, London SE1, England
[4] Siemens Healthcare Ltd, MR Res Collaborat, Camberley GU15 3YL, England
基金
英国工程与自然科学研究理事会;
关键词
Image reconstruction; Image quality; Task analysis; Transfer learning; Training; Medical diagnostic imaging; Positron emission tomography; Convolutional neural networks (CNNs); deep learning; image quality; image reconstruction; transfer learning; RECONSTRUCTION;
D O I
10.1109/TRPMS.2022.3231702
中图分类号
R8 [特种医学]; R445 [影像诊断学];
学科分类号
1002 ; 100207 ; 1009 ;
摘要
Positron emission tomography (PET) using a fraction of the usual injected dose would reduce the amount of radioligand needed, as well as the radiation dose to patients and staff, but would compromise reconstructed image quality. For performing the same clinical tasks with such images, a clinical (rather than numerical) image quality assessment is essential. This process can be automated with convolutional neural networks (CNNs). However, the scarcity of clinical quality readings is a challenge. We hypothesize that exploiting easily available quantitative information in pretext learning tasks or using established pre-trained networks could improve CNN performance for predicting clinical assessments with limited data. CNNs were pre-trained to predict injected dose from image patches extracted from eight real patient datasets, reconstructed using between 0.5% and 100% of the available data. Transfer learning with seven different patients was used to predict three clinically scored quality metrics ranging from 0-3: 1) global quality rating; 2) pattern recognition; and 3) diagnostic confidence. This was compared to pre-training via a VGG16 network at varying pre-training levels. Pre-training improved test performance for this task: the mean absolute error of 0.53 (compared to 0.87 without pre-training), was within clinical scoring uncertainty. Future work may include using the CNN for novel reconstruction methods performance assessment.
引用
收藏
页码:372 / 381
页数:10
相关论文
共 56 条
[1]  
Abadi M., 2015, TensorFlow: Large-scale machine Learning on heterogeneous distributed systems, DOI DOI 10.48550/ARXIV.1603.04467
[2]   Review of deep learning: concepts, CNN architectures, challenges, applications, future directions [J].
Alzubaidi, Laith ;
Zhang, Jinglan ;
Humaidi, Amjad J. ;
Al-Dujaili, Ayad ;
Duan, Ye ;
Al-Shamma, Omran ;
Santamaria, J. ;
Fadhel, Mohammed A. ;
Al-Amidie, Muthana ;
Farhan, Laith .
JOURNAL OF BIG DATA, 2021, 8 (01)
[3]  
[Anonymous], 2017, 7 INT C IMAGE PROCES, DOI DOI 10.1109/IPTA.2017.8310149
[4]  
Ashburner J., 2013, SPM8 Manual
[5]   MR-Guided Kernel EM Reconstruction for Reduced Dose PET Imaging [J].
Bland, James ;
Mehranian, Abolfazl ;
Belzunce, Martin A. ;
Ellis, Sam ;
McGinnity, Colm J. ;
Hammers, Alexander ;
Reader, Andrew J. .
IEEE TRANSACTIONS ON RADIATION AND PLASMA MEDICAL SCIENCES, 2018, 2 (03) :235-243
[6]   Deep Neural Networks for No-Reference and Full-Reference Image Quality Assessment [J].
Bosse, Sebastian ;
Maniry, Dominique ;
Mueller, Klaus-Robert ;
Wiegand, Thomas ;
Samek, Wojciech .
IEEE TRANSACTIONS ON IMAGE PROCESSING, 2018, 27 (01) :206-219
[7]  
Chollet F., 2015, Keras
[8]   Automated Fundus Image Quality Assessment in Retinopathy of Prematurity Using Deep Convolutional Neural Networks [J].
Coyner, Aaron S. ;
Swan, Ryan ;
Campbell, J. Peter ;
Ostmo, Susan ;
Brown, James M. ;
Kalpathy-Cramer, Jayashree ;
Kim, Sang Jin ;
Jonas, Karyn E. ;
Chan, R. V. Paul ;
Chiang, Michael F. .
OPHTHALMOLOGY RETINA, 2019, 3 (05) :444-450
[9]  
Deng J, 2009, PROC CVPR IEEE, P248, DOI 10.1109/CVPRW.2009.5206848
[10]   Assessment of Convolutional Neural Networks for Automated Classification of Chest Radiographs [J].
Dunnmon, Jared A. ;
Yi, Darvin ;
Langlotz, Curtis P. ;
Re, Christopher ;
Rubin, Daniel L. ;
Lungren, Matthew P. .
RADIOLOGY, 2019, 290 (02) :537-544