Rational design of small-molecule responsive protein switches

被引:2
|
作者
Shui, Sailan [1 ,2 ]
Buckley, Stephen [1 ,2 ]
Scheller, Leo [1 ,2 ]
Correia, Bruno E. [1 ,2 ]
机构
[1] Ecole Polytech Fed Lausanne, STI, Lab Prot Design & Immunoengn LPDI, Lausanne, Switzerland
[2] Swiss Inst Bioinformat SIB, Lausanne, Switzerland
基金
瑞士国家科学基金会; 欧洲研究理事会;
关键词
computational protein design; protein switches; protein-ligand interactions; protein-protein interactions; small molecule; synthetic biology; INDUCED DIMERIZATION; BINDING DOMAIN; ACTIVATION; RAPAMYCIN; HAPTEN;
D O I
10.1002/pro.4774
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Small-molecule responsive protein switches are powerful tools for controlling cellular processes. These switches are designed to respond rapidly and specifically to their inducer. They have been used in numerous applications, including the regulation of gene expression, post-translational protein modification, and signal transduction. Typically, small-molecule responsive protein switches consist of two proteins that interact with each other in the presence or absence of a small molecule. Recent advances in computational protein design already contributed to the development of protein switches with an expanded range of small-molecule inducers and increasingly sophisticated switch mechanisms. Further progress in the engineering of small-molecule responsive switches is fueled by cutting-edge computational design approaches, which will enable more complex and precise control over cellular processes and advance synthetic biology applications in biotechnology and medicine. Here, we discuss recent milestones and how technological advances are impacting the development of chemical switches.
引用
收藏
页数:12
相关论文
共 50 条
  • [31] Rational design of a small molecule-responsive intramer controlling transgene expression in mammalian cells
    Auslaender, David
    Wieland, Markus
    Auslaender, Simon
    Tigges, Marcel
    Fussenegger, Martin
    NUCLEIC ACIDS RESEARCH, 2011, 39 (22) : e155
  • [32] Rational design of small-molecule inhibitors of the LEDGF/p75-integrase interaction and HIV replication
    Christ, Frauke
    Voet, Arnout
    Marchand, Arnaud
    Nicolet, Stefan
    Desimmie, Belete A.
    Marchand, Damien
    Bardiot, Dorothee
    Van der Veken, Nam Joo
    Van Remoortel, Barbara
    Strelkov, Sergei V.
    De Maeyer, Marc
    Chaltin, Patrick
    Debyser, Zeger
    NATURE CHEMICAL BIOLOGY, 2010, 6 (06) : 442 - 448
  • [33] Rational design of small-molecule inhibitors of the LEDGF/p75-integrase interaction and HIV replication
    Frauke Christ
    Arnout Voet
    Arnaud Marchand
    Stefan Nicolet
    Belete A Desimmie
    Damien Marchand
    Dorothée Bardiot
    Nam Joo Van der Veken
    Barbara Van Remoortel
    Sergei V Strelkov
    Marc De Maeyer
    Patrick Chaltin
    Zeger Debyser
    Nature Chemical Biology, 2010, 6 : 442 - 448
  • [34] Rational design of nanocarrier for small molecule delivery
    Xu, Ting
    Lim, Marc
    Jung, Benson
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2019, 258
  • [35] Microenvironment-Responsive Small-Molecule Probe for Pulmonary Fibrosis Detection
    Dong, Ying
    Li, Xiao-Rong
    Chen, Qi
    Guo, Rui-Ying
    Tang, Bi-Xi
    Kan, Wei-Juan
    Zhang, Wei
    Hu, Yongzhou
    Li, Jia
    Zang, Yi
    Li, Xin
    ANALYTICAL CHEMISTRY, 2020, 92 (01) : 699 - 706
  • [36] Ordering a Dynamic Protein Via a Small-Molecule Stabilizer
    Wang, Ningkun
    Majmudar, Chinmay Y.
    Pomerantz, William C.
    Gagnon, Jessica K.
    Sadowsky, Jack D.
    Meagher, Jennifer L.
    Johnson, Taylor K.
    Stuckey, Jeanne A.
    Brooks, Charles L., III
    Wells, James A.
    Mapp, Anna K.
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2013, 135 (09) : 3363 - 3366
  • [37] Small-molecule inhibitors of protein geranylgeranyltransferase type I
    Castellano, Sabrina
    Fiji, Hannah D. G.
    Kinderman, Sape S.
    Watanabe, Masaru
    de Leon, Pablo
    Tamanoi, Fuyuhiko
    Kwon, Ohyun
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2007, 129 (18) : 5843 - +
  • [38] Catalytic in vivo protein knockdown by small-molecule PROTACs
    Bondeson, Daniel P.
    Mares, Alina
    Smith, Ian E. D.
    Ko, Eunhwa
    Campos, Sebastien
    Miah, Afjal H.
    Mulholland, Katie E.
    Routly, Natasha
    Buckley, Dennis L.
    Gustafson, Jeffrey L.
    Zinn, Nico
    Grandi, Paola
    Shimamura, Satoko
    Bergamini, Giovanna
    Faelth-Savitski, Maria
    Bantscheff, Marcus
    Cox, Carly
    Gordon, Deborah A.
    Willard, Ryan R.
    Flanagan, John J.
    Casillas, Linda N.
    Votta, Bartholomew J.
    den Besten, Willem
    Famm, Kristoffer
    Kruidenier, Laurens
    Carter, Paul S.
    Harling, John D.
    Churcher, Ian
    Crews, Craig M.
    NATURE CHEMICAL BIOLOGY, 2015, 11 (08) : 611 - U120
  • [39] SPLINTS: small-molecule protein ligand interface stabilizers
    Fischer, Eric S.
    Park, Eunyoung
    Eck, Michael J.
    Thomae, Nicolas H.
    CURRENT OPINION IN STRUCTURAL BIOLOGY, 2016, 37 : 115 - 122
  • [40] Small-Molecule PROTACS: New Approaches to Protein Degradation
    Toure, Momar
    Crews, Craig M.
    ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2016, 55 (06) : 1966 - 1973