Virus taxonomy and the role of the International Committee on Taxonomy of Viruses (ICTV)

被引:24
作者
Siddell, Stuart G. [1 ]
Smith, Donald B. [2 ]
Adriaenssens, Evelien [3 ]
Alfenas-Zerbini, Poliane [4 ]
Dutilh, Bas E. [5 ,6 ]
Garcia, Maria Laura [7 ]
Junglen, Sandra [8 ,9 ,10 ]
Krupovic, Mart [11 ]
Kuhn, Jens H. [12 ]
Lambert, Amy J. [13 ]
Lefkowitz, Elliot J. [14 ]
Lobocka, Malgorzata [15 ]
Mushegian, Arcady R. [16 ]
Oksanen, Hanna M. [17 ]
Robertson, David L. [18 ]
Rubino, Luisa [19 ]
Sabanadzovic, Sead [20 ]
Simmonds, Peter [2 ]
Suzuki, Nobuhiro [21 ]
Van Doorslaer, Koenraad [22 ,23 ]
Vandamme, Anne-Mieke [24 ,25 ]
Varsani, Arvind [26 ]
Zerbini, F. Murilo [27 ]
机构
[1] Univ Bristol, Fac Life Sci, Sch Cellular & Mol Med, Bristol, England
[2] Univ Oxford, Nuffield Dept Med, Oxford, England
[3] Quadram Inst Biosci, Norwich Res Pk, Norwich, England
[4] Univ Fed Vicosa, Dept Microbiol BIOAGRO, Vicosa, MG, Brazil
[5] Friedrich Schiller Univ Jena, Inst Biodivers, Fac Biol Sci, Cluster Excellence Balance Microverse, Jena, Germany
[6] Univ Utrecht, Theoret Biol & Bioinformat, Sci Life, Utrecht, Netherlands
[7] UNLP, Inst Biotecnol & Biol Mol, CONICET, CCT La Plata, La Plata, Buenos Aires, Argentina
[8] Charite Univ Med Berlin, Inst Virol, Berlin, Germany
[9] Humboldt Univ, Free Univ Berlin, Berlin, Germany
[10] Berlin Inst Hlth, Berlin, Germany
[11] Univ Paris Cite, Inst Pasteur, Archaeal Virol Unit, CNRS UMR6047, Paris, France
[12] NIAID, Integrated Res Facil Ft Detrick IRF Frederick, NIH, Frederick, MD USA
[13] Ctr Dis Control & Prevent, Div Vector Borne Dis, Natl Ctr Emerging & Zoonot Infect Dis, Ft Collins, CO USA
[14] Univ Alabama Birmingham UAB, Dept Microbiol, Birmingham, AL USA
[15] Polish Acad Sci, Inst Biochem & Biophys, Warsaw, Poland
[16] Natl Sci Fdn, Div Mol & Cellular Biosci, Alexandria, VA USA
[17] Univ Helsinki, Fac Biol & Environm Sci, Mol & Integrat Biosci Res Programme, Helsinki, Finland
[18] MRC Univ Glasgow Ctr Virus Res, Glasgow, Scotland
[19] CNR, Ist Protez Sostenibile Piante, SS Bari, Bari, Italy
[20] Mississippi State Univ, Dept Biochem Mol Biol Entomol & Plant Pathol, Mississippi State, MS USA
[21] Okayama Univ, Inst Plant Sci & Resources, Kurashiki, Okayama, Japan
[22] Univ Arizona, Sch Anim & Comparat Biomed Sci, Dept Immunobiol, Inst BIO5,Genet Grad Interdisciplinary Program,Can, Tucson, AZ USA
[23] Univ Arizona, Canc Ctr, Tucson, AZ USA
[24] Katholieke Univ Leuven, Rega Inst Med Res Clin & Epidemiol Virol, Dept Microbiol Immunol & Transplantat, Leuven, Belgium
[25] Univ Nova Lisboa, Ctr Global Hlth & Trop Med, Inst Higiene & Med Trop, Lisbon, Portugal
[26] Arizona State Univ, Biodesign Ctr Fundamental & Appl Microbi, Ctr Evolut & Med, Sch Life Sci, Tempe, AZ USA
[27] Univ Fed Vicosa, Dept Fitopatol BIOAGRO, Vicosa, MG, Brazil
基金
美国国家卫生研究院; 芬兰科学院; 美国食品与农业研究所; 欧洲研究理事会;
关键词
virus taxonomy; virus classification; virus nomenclature; International Committee on Taxonomy of Viruses; ICTV;
D O I
10.1099/jgv.0.001840
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
The taxonomy of viruses is developed and overseen by the International Committee on Taxonomy of Viruses (ICTV), which scrutinizes, approves and ratifies taxonomic proposals, and maintains a list of virus taxa with approved names (https:// ictv.global). The ICTV has approximately 180 members who vote by simple majority. Taxon-specific Study Groups estab-lished by the ICTV have a combined membership of over 600 scientists from the wider virology community; they provide comprehensive expertise across the range of known viruses and are major contributors to the creation and evaluation of taxonomic proposals. Proposals can be submitted by anyone and will be considered by the ICTV irrespective of Study Group support. Thus, virus taxonomy is developed from within the virology community and realized by a democratic decision-making process. The ICTV upholds the distinction between a virus or replicating genetic element as a physical entity and the taxon category to which it is assigned. This is reflected by the nomenclature of the virus species taxon, which is now mandated by the ICTV to be in a binomial format (genus + species epithet) and is typographically distinct from the names of viruses. Classification of viruses below the rank of species (such as, genotypes or strains) is not within the remit of the ICTV. This article, authored by the ICTV Executive Committee, explains the principles of virus taxonomy and the organization, function, processes and resources of the ICTV, with the aim of encouraging greater understanding and interaction among the wider virology community.
引用
收藏
页数:11
相关论文
共 45 条
  • [1] 50 years of the International Committee on Taxonomy of Viruses: progress and prospects
    Adams, Michael J.
    Lefkowitz, Elliot J.
    King, Andrew M. Q.
    Harrach, Balazs
    Harrison, Robert L.
    Knowles, Nick J.
    Kropinski, Andrew M.
    Krupovic, Mart
    Kuhn, Jens H.
    Mushegian, Arcady R.
    Nibert, Max L.
    Sabanadzovic, Sead
    Sanfacon, Helene
    Siddell, Stuart G.
    Simmonds, Peter
    Varsani, Arvind
    Zerbini, Francisco Murilo
    Orton, Richard J.
    Smith, Donald B.
    Gorbalenya, Alexander E.
    Davison, Andrew J.
    [J]. ARCHIVES OF VIROLOGY, 2017, 162 (05) : 1441 - 1446
  • [2] How to Name and Classify Your Phage: An Informal Guide
    Adriaenssens, Evelien M.
    Brister, J. Rodney
    [J]. VIRUSES-BASEL, 2017, 9 (04):
  • [3] The genomic underpinnings of eukaryotic virus taxonomy: creating a sequence-based framework for family-level virus classification
    Aiewsakun, Pakorn
    Simmonds, Peter
    [J]. MICROBIOME, 2018, 6
  • [4] EXPRESSION OF ANIMAL VIRUS GENOMES
    BALTIMORE, D
    [J]. BACTERIOLOGICAL REVIEWS, 1971, 35 (03) : 235 - +
  • [5] Improvements to pairwise sequence comparison (PASC): a genome-based web tool for virus classification
    Bao, Yiming
    Chetvernin, Vyacheslav
    Tatusova, Tatiana
    [J]. ARCHIVES OF VIROLOGY, 2014, 159 (12) : 3293 - 3304
  • [6] Benko M, 2022, J GEN VIROL, P103
  • [7] Strengthening the Interaction of the Virology Community with the International Committee on Taxonomy of Viruses (ICTV) by Linking Virus Names and Their Abbreviations to Virus Species
    Calisher, Charles H.
    Briese, Thomas
    Brister, J. Rodney
    Charrel, Remi N.
    Duerrwald, Ralf
    Ebihara, Hideki
    Fulhorst, Charles F.
    Gao, George Fu
    Groschup, Martin H.
    Haddow, Andrew D.
    Hyndman, Timothy H.
    Junglen, Sandra
    Klempa, Boris
    Klingstroem, Jonas
    Kropinski, Andrew M.
    Krupovic, Mart
    LaBeaud, A. Desiree
    Maes, Piet
    Nowotny, Norbert
    Teixeira Nunes, Marcio Roberto
    Payne, Susan L.
    Radoshitzky, Sheli R.
    Rubbenstroth, Dennis
    Sabanadzovic, Sead
    Sasaya, Takahide
    Stenglein, Mark D.
    Varsani, Arvind
    Wahl, Victoria
    Weaver, Scott C.
    Zerbini, Francisco Murilo
    Vasilakis, Nikos
    Kuhn, Jens H.
    [J]. SYSTEMATIC BIOLOGY, 2019, 68 (05) : 828 - 839
  • [8] Current challenges to virus discovery by metatranscriptomics
    Cobbin, Joanna C. A.
    Charon, Justine
    Harvey, Erin
    Holmes, Edward C.
    Mahar, Jackie E.
    [J]. CURRENT OPINION IN VIROLOGY, 2021, 51 : 1 - 8
  • [9] The RNA virosphere: How big and diverse is it?
    Dominguez-Huerta, Guillermo
    Wainaina, James M.
    Zayed, Ahmed A.
    Culley, Alexander I.
    Kuhn, Jens H.
    Sullivan, Matthew B.
    [J]. ENVIRONMENTAL MICROBIOLOGY, 2023, 25 (01) : 209 - 215
  • [10] Perspective on taxonomic classification of uncultivated viruses
    Dutilh, Bas E.
    Varsani, Arvind
    Tong, Yigang
    Simmonds, Peter
    Sabanadzovic, Sead
    Rubino, Luisa
    Roux, Simon
    Reyes Munoz, Alejandro
    Lood, Cedric
    Lefkowitz, Elliot J.
    Kuhn, Jens H.
    Krupovic, Mart
    Edwards, Robert A.
    Brister, J. Rodney
    Adriaenssens, Evelien M.
    Sullivan, Matthew B.
    [J]. CURRENT OPINION IN VIROLOGY, 2021, 51 : 1 - 9