Complete genome sequence of Halomonas sp. strain M1, a thiosulfate-oxidizing bacterium isolated from a hyperalkaline serpentinizing system, Ney Springs

被引：0

作者：

Alibaglouei, Mehdi ^{[1
]}

Trutschel, Leah R. ^{[1
]}

Rowe, Annette R. ^{[1
]}

Sackett, Joshua D. ^{[1
]}

机构：

[1] Univ Cincinnati, Dept Biol Sci, Cincinnati, OH 45221 USA

来源：

MICROBIOLOGY RESOURCE ANNOUNCEMENTS | 2023年

关键词：

heterotrophic sulfur oxidation; alkaliphile; serpentinization; thiosulfate oxidation;

D O I：

10.1128/MRA.00508-23

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

We report the full genome sequence of Halomonas sp. strain M1, isolated from a continental high pH serpentinizing spring in northern California, USA. The 3.7 Mb genome has a G + C content of 54.13%, encodes 3,354 protein-coding genes, and provides insights into the metabolic potential for sulfur oxidation.

引用

页数：3

共 16 条

[1] KBase: The United States Department of Energy Systems Biology Knowledgebase [J].

Arkin, Adam P. ;

Cottingham, Robert W. ;

Henry, Christopher S. ;

Harris, Nomi L. ;

Stevens, Rick L. ;

Maslov, Sergei ;

Dehal, Paramvir ;

Ware, Doreen ;

Perez, Fernando ;

Canon, Shane ;

Sneddon, Michael W. ;

Henderson, Matthew L. ;

Riehl, William J. ;

Murphy-Olson, Dan ;

Chan, Stephen Y. ;

Kamimura, Roy T. ;

Kumari, Sunita ;

Drake, Meghan M. ;

Brettin, Thomas S. ;

Glass, Elizabeth M. ;

Chivian, Dylan ;

Gunter, Dan ;

Weston, David J. ;

Allen, Benjamin H. ;

Baumohl, Jason ;

Best, Aaron A. ;

Bowen, Ben ;

Brenner, Steven E. ;

Bun, Christopher C. ;

Chandonia, John-Marc ;

Chia, Jer-Ming ;

Colasanti, Ric ;

Conrad, Neal ;

Davis, James J. ;

Davison, Brian H. ;

DeJongh, Matthew ;

Devoid, Scott ;

Dietrich, Emily ;

Dubchak, Inna ;

Edirisinghe, Janaka N. ;

Fang, Gang ;

Faria, Jose P. ;

Frybarger, Paul M. ;

Gerlach, Wolfgang ;

Gerstein, Mark ;

Greiner, Annette ;

Gurtowski, James ;

Haun, Holly L. ;

He, Fei ;

Jain, Rashmi .

NATURE BIOTECHNOLOGY, 2018, 36 (07) :566-569

[2] Methane- and sulfur-metabolizing microbial communities dominate the Lost City hydrothermal field ecosystem [J].

Brazelton, William J. ;

Schrenk, Matthew O. ;

Kelley, Deborah S. ;

Baross, John A. .

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2006, 72 (09) :6257-6270

[3] GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database [J].

Chaumeil, Pierre-Alain ;

Mussig, Aaron J. ;

Hugenholtz, Philip ;

Parks, Donovan H. .

BIOINFORMATICS, 2020, 36 (06) :1925-1927

[4] Active microbial sulfate reduction in fluids of serpentinizing peridotites of the continental subsurface [J].

Glombitza, Clemens ;

Putman, Lindsay, I ;

Rempfert, Kaitlin R. ;

Kubo, Michael D. ;

Schrenk, Matthew O. ;

Templeton, Alexis S. ;

Hoehler, Tori M. .

COMMUNICATIONS EARTH & ENVIRONMENT, 2021, 2 (01)

[5] Energetically Informed Niche Models of Hydrogenotrophs Detected in Sediments of Serpentinized Fluids of the Samail Ophiolite of Oman [J].

Howells, Alta E. G. ;

Leong, James A. M. ;

Ely, Tucker ;

Santana, Michelle ;

Robinson, Kirt ;

Esquivel-Elizondo, Sofia ;

Cox, Alysia ;

Poret-Peterson, Amisha ;

Krajmalnik-Brown, Rosa ;

Shock, Everett L. .

JOURNAL OF GEOPHYSICAL RESEARCH-BIOGEOSCIENCES, 2022, 127 (03)

[6] Assembly of long, error-prone reads using repeat graphs [J].

Kolmogorov, Mikhail ;

Yuan, Jeffrey ;

Lin, Yu ;

Pevzner, Pavel A. .

NATURE BIOTECHNOLOGY, 2019, 37 (05) :540-+

[7]

Li H, 2009, BIOINFORMATICS, V25, P1754, DOI [10.1093/bioinformatics/btp352, 10.1093/bioinformatics/btp324, 10.1093/bioinformatics/btp698]

[8] Ductile deformation during carbonation of serpentinized peridotite [J].

Menzel, Manuel D. ;

Urai, Janos L. ;

Ukar, Estibalitz ;

Hirth, Greg ;

Schwedt, Alexander ;

Kovacs, Andras ;

Kibkalo, Lidia ;

Kelemen, Peter B. .

NATURE COMMUNICATIONS, 2022, 13 (01)

[9]

Ohio Supercomputer Center, 1987, Columbus OH

[10] CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes [J].

Parks, Donovan H. ;

Imelfort, Michael ;

Skennerton, Connor T. ;

Hugenholtz, Philip ;

Tyson, Gene W. .

GENOME RESEARCH, 2015, 25 (07) :1043-1055

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