Genomic and transcriptomic advances in amyotrophic lateral sclerosis

被引:7
作者
Rizzuti, Mafalda [1 ]
Sali, Luca [1 ]
Melzi, Valentina [1 ]
Scarcella, Simone [2 ]
Costamagna, Gianluca [2 ]
Ottoboni, Linda [2 ]
Quetti, Lorenzo [1 ]
Brambilla, Lorenzo [1 ]
Papadimitriou, Dimitra [3 ]
Verde, Federico [2 ,4 ]
Ratti, Antonia [4 ,5 ]
Ticozzi, Nicola [2 ,4 ]
Comi, Giacomo Pietro [1 ,2 ,6 ]
Corti, Stefania [1 ,2 ]
Gagliardi, Delia [2 ]
机构
[1] Fdn IRCCS CaGranda Osped Maggiore Policlin, Neurol Unit, Milan, Italy
[2] Univ Milan, Dino Ferrari Ctr, Dept Pathophysiol & Transplantat, Milan, Italy
[3] Henry Dunant Hosp Ctr, Neurol Dept, Athens, Greece
[4] IRCCS Ist Auxol Italiano, Dept Neurol & Lab Neurosci, Milan, Italy
[5] Univ Milan, Dept Med Biotechnol & Translat Med, Milan, Italy
[6] Fdn IRCCS CaGranda Osped Maggiore Policlin, Dept Neurosci, Neuromuscular & Rare Dis Unit, Milan, Italy
基金
欧盟地平线“2020”;
关键词
ALS; Genomics; Epigenomics; Transcriptomics; MicroRNAs; Biomarkers; RNA-BINDING PROTEINS; ANTISENSE OLIGONUCLEOTIDE TOFERSEN; WIDE ASSOCIATION ANALYSES; GGC REPEAT EXPANSION; SPINAL-CORD; GENE-EXPRESSION; FRONTOTEMPORAL DEMENTIA; EPIGENETIC MECHANISMS; POTENTIAL BIOMARKERS; SKELETAL-MUSCLE;
D O I
10.1016/j.arr.2023.102126
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Amyotrophic lateral sclerosis (ALS) is a neurodegenerative disorder and the most common motor neuron disease. ALS shows substantial clinical and molecular heterogeneity. In vitro and in vivo models coupled with multiomic techniques have provided important contributions to unraveling the pathomechanisms underlying ALS. To date, despite promising results and accumulating knowledge, an effective treatment is still lacking. Here, we provide an overview of the literature on the use of genomics, epigenomics, transcriptomics and microRNAs to deeply investigate the molecular mechanisms developing and sustaining ALS. We report the most relevant genes implicated in ALS pathogenesis, discussing the use of different high-throughput sequencing techniques and the role of epigenomic modifications. Furthermore, we present transcriptomic studies discussing the most recent advances, from microarrays to bulk and single-cell RNA sequencing. Finally, we discuss the use of microRNAs as potential biomarkers and promising tools for molecular intervention. The integration of data from multiple omic approaches may provide new insights into pathogenic pathways in ALS by shedding light on diagnostic and prognostic biomarkers, helping to stratify patients into clinically relevant subgroups, revealing novel therapeutic targets and supporting the development of new effective therapies.
引用
收藏
页数:24
相关论文
共 336 条
  • [11] Histone Deacetylase-1 (HDAC1) Is a Molecular Switch between Neuronal Survival and Death
    Bardai, Farah H.
    Price, Valerie
    Zaayman, Marcus
    Wang, Lulu
    D'Mello, Santosh R.
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2012, 287 (42) : 35444 - 35453
  • [12] Selective Toxicity by HDAC3 in Neurons: Regulation by Akt and GSK3β
    Bardai, Farah H.
    D'Mello, Santosh R.
    [J]. JOURNAL OF NEUROSCIENCE, 2011, 31 (05) : 1746 - 1751
  • [13] Metazoan MicroRNAs
    Bartel, David P.
    [J]. CELL, 2018, 173 (01) : 20 - 51
  • [14] Answer ALS, a large-scale resource for sporadic and familial ALS combining clinical and multi-omics data from induced pluripotent cell lines
    Baxi, Emily G.
    Thompson, Terri
    Li, Jonathan
    Kaye, Julia A.
    Lim, Ryan G.
    Wu, Jie
    Ramamoorthy, Divya
    Lima, Leandro
    Vaibhav, Vineet
    Matlock, Andrea
    Frank, Aaron
    Coyne, Alyssa N.
    Landin, Barry
    Ornelas, Loren
    Mosmiller, Elizabeth
    Thrower, Sara
    Farr, S. Michelle
    Panther, Lindsey
    Gomez, Emilda
    Galvez, Erick
    Perez, Daniel
    Meepe, Imara
    Lei, Susan
    Mandefro, Berhan
    Trost, Hannah
    Pinedo, Louis
    Banuelos, Maria G.
    Liu, Chunyan
    Moran, Ruby
    Garcia, Veronica
    Workman, Michael
    Ho, Richie
    Wyman, Stacia
    Roggenbuck, Jennifer
    Harms, Matthew B.
    Stocksdale, Jennifer
    Miramontes, Ricardo
    Wang, Keona
    Venkatraman, Vidya
    Holewenski, Ronald
    Sundararaman, Niveda
    Pandey, Rakhi
    Manalo, Danica-Mae
    Donde, Aneesh
    Huynh, Nhan
    Adam, Miriam
    Wassie, Brook T.
    Vertudes, Edward
    Amirani, Naufa
    Raja, Krishna
    [J]. NATURE NEUROSCIENCE, 2022, 25 (02) : 226 - +
  • [15] Therapeutic reduction of ataxin-2 extends lifespan and reduces pathology in TDP-43 mice
    Becker, Lindsay A.
    Huang, Brenda
    Bieri, Gregor
    Ma, Rosanna
    Knowles, David A.
    Jafar-Nejad, Paymaan
    Messing, James
    Kim, Hong Joo
    Soriano, Armand
    Auburger, Georg
    Pulst, Stefan M.
    Taylor, J. Paul
    Rigo, Frank
    Gitler, Aaron D.
    [J]. NATURE, 2017, 544 (7650) : 367 - +
  • [16] Characterization of DNA hypermethylation in the cerebellum of c9FTD/ALS patients
    Belzil, Veronique V.
    Bauer, Peter O.
    Gendron, Tania F.
    Murray, Melissa E.
    Dickson, Dennis
    Petrucelli, Leonard
    [J]. BRAIN RESEARCH, 2014, 1584 : 15 - 21
  • [17] Multitarget-directed ligands for neurodegenerative diseases: real opportunity or blurry mirage?
    Benchekroun, Mohamed
    Maramai, Samuele
    [J]. FUTURE MEDICINAL CHEMISTRY, 2019, 11 (04) : 261 - 263
  • [18] Identification of miRNAs as Potential Biomarkers in Cerebrospinal Fluid from Amyotrophic Lateral Sclerosis Patients
    Benigni, Michele
    Ricci, Claudia
    Jones, Ashley R.
    Giannini, Fabio
    Al-Chalabi, Ammar
    Battistini, Stefania
    [J]. NEUROMOLECULAR MEDICINE, 2016, 18 (04) : 551 - 560
  • [19] Epigenetics in amyotrophic lateral sclerosis: a role for histone post-translational modifications in neurodegenerative disease
    Bennett, Seth A.
    Tanaz, Royena
    Cobos, Samantha N.
    Torrente, Mariana P.
    [J]. TRANSLATIONAL RESEARCH, 2019, 204 : 19 - 30
  • [20] Global identification of human transcribed sequences with genome tiling arrays
    Bertone, P
    Stolc, V
    Royce, TE
    Rozowsky, JS
    Urban, AE
    Zhu, XW
    Rinn, JL
    Tongprasit, W
    Samanta, M
    Weissman, S
    Gerstein, M
    Snyder, M
    [J]. SCIENCE, 2004, 306 (5705) : 2242 - 2246