A CT-based transfer learning approach to predict NSCLC recurrence: The added-value of peritumoral region

被引:12
作者
Bove, Samantha [1 ]
Fanizzi, Annarita [1 ]
Fadda, Federico [1 ]
Comes, Maria Colomba [1 ]
Catino, Annamaria [1 ]
Cirillo, Angelo [1 ]
Cristofaro, Cristian [1 ]
Montrone, Michele [1 ]
Nardone, Annalisa [1 ]
Pizzutilo, Pamela [1 ]
Tufaro, Antonio [1 ]
Galetta, Domenico [1 ]
Massafra, Raffaella [1 ]
机构
[1] IRCCS Ist Tumori Giovanni Paolo II, Bari, Italy
关键词
CELL LUNG-CANCER; RADIOMICS; SURVIVAL; RISK;
D O I
10.1371/journal.pone.0285188
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Non-small cell lung cancer (NSCLC) represents 85% of all new lung cancer diagnoses and presents a high recurrence rate after surgery. Thus, an accurate prediction of recurrence risk in NSCLC patients at diagnosis could be essential to designate risk patients to more aggressive medical treatments. In this manuscript, we apply a transfer learning approach to predict recurrence in NSCLC patients, exploiting only data acquired during its screening phase. Particularly, we used a public radiogenomic dataset of NSCLC patients having a primary tumor CT image and clinical information. Starting from the CT slice containing the tumor with maximum area, we considered three different dilatation sizes to identify three Regions of Interest (ROIs): CROP (without dilation), CROP 10 and CROP 20. Then, from each ROI, we extracted radiomic features by means of different pre-trained CNNs. The latter have been combined with clinical information; thus, we trained a Support Vector Machine classifier to predict the NSCLC recurrence. The classification performances of the devised models were finally evaluated on both the hold-out training and hold-out test sets, in which the original sample has been previously divided. The experimental results showed that the model obtained analyzing CROP 20 images, which are the ROIs containing more peritumoral area, achieved the best performances on both the hold-out training set, with an AUC of 0.73, an Accuracy of 0.61, a Sensitivity of 0.63, and a Specificity of 0.60, and on the hold-out test set, with an AUC value of 0.83, an Accuracy value of 0.79, a Sensitivity value of 0.80, and a Specificity value of 0.78. The proposed model represents a promising procedure for early predicting recurrence risk in NSCLC patients.
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页数:14
相关论文
共 58 条
[1]  
Afshar P, 2020, SCI REP-UK, V10, DOI 10.1038/s41598-020-69106-8
[2]  
[Anonymous], ABOUT US
[3]   Improved Genotype-Guided Deep Radiomics Signatures for Recurrence Prediction of Non-Small Cell Lung Cancer [J].
Aonpong, Panyanat ;
Iwamoto, Yutaro ;
Han, Xian-Hua ;
Lin, Lanfen ;
Chen, Yen-Wei .
2021 43RD ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE & BIOLOGY SOCIETY (EMBC), 2021, :3561-3564
[4]   Deep segmentation networks predict survival of non-small cell lung cancer [J].
Baek, Stephen ;
He, Yusen ;
Allen, Bryan G. ;
Buatti, John M. ;
Smith, Brian J. ;
Tong, Ling ;
Sun, Zhiyu ;
Wu, Jia ;
Diehn, Maximilian ;
Loo, Billy W. ;
Plichta, Kristin A. ;
Seyedin, Steven N. ;
Gannon, Maggie ;
Cabel, Katherine R. ;
Kim, Yusung ;
Wu, Xiaodong .
SCIENTIFIC REPORTS, 2019, 9 (1)
[5]   A radiogenomic dataset of non-small cell lung cancer [J].
Bakr, Shaimaa ;
Gevaert, Olivier ;
Echegaray, Sebastian ;
Ayers, Kelsey ;
Zhou, Mu ;
Shafiq, Majid ;
Zheng, Hong ;
Benson, Jalen Anthony ;
Zhang, Weiruo ;
Leung, Ann N. C. ;
Kadoch, Michael ;
Hoang, Chuong D. ;
Shrager, Joseph ;
Quon, Andrew ;
Rubin, Daniel L. ;
Plevritis, Sylvia K. ;
Napel, Sandy .
SCIENTIFIC DATA, 2018, 5
[6]  
Bellotti R, 2004, Neurol Clin Neurophysiol, V2004, P37
[7]   Predicting cancer outcomes with radiomics and artificial intelligence in radiology [J].
Bera, Kaustav ;
Braman, Nathaniel ;
Gupta, Amit ;
Velcheti, Vamsidhar ;
Madabhushi, Anant .
NATURE REVIEWS CLINICAL ONCOLOGY, 2022, 19 (02) :132-146
[8]   Prognostic value of anthropometric measures extracted from whole-body CT using deep learning in patients with non-small-cell lung cancer [J].
Blanc-Durand, Paul ;
Campedel, Luca ;
Mule, Sebastien ;
Jegou, Simon ;
Luciani, Alain ;
Pigneur, Frederic ;
Itti, Emmanuel .
EUROPEAN RADIOLOGY, 2020, 30 (06) :3528-3537
[9]   A ultrasound-based radiomic approach to predict the nodal status in clinically negative breast cancer patients [J].
Bove, Samantha ;
Comes, Maria Colomba ;
Lorusso, Vito ;
Cristofaro, Cristian ;
Didonna, Vittorio ;
Gatta, Gianluca ;
Giotta, Francesco ;
La Forgia, Daniele ;
Latorre, Agnese ;
Pastena, Maria Irene ;
Petruzzellis, Nicole ;
Pomarico, Domenico ;
Rinaldi, Lucia ;
Tamborra, Pasquale ;
Zito, Alfredo ;
Fanizzi, Annarita ;
Massafra, Raffaella .
SCIENTIFIC REPORTS, 2022, 12 (01)
[10]   Radiomics and deep learning methods for the prediction of 2-year overall survival in LUNG1 dataset [J].
Braghetto, Anna ;
Marturano, Francesca ;
Paiusco, Marta ;
Baiesi, Marco ;
Bettinelli, Andrea .
SCIENTIFIC REPORTS, 2022, 12 (01)