Molecular docking as a tool for the discovery of molecular targets of nutraceuticals in diseases management

被引:447
作者
Agu, P. C. [1 ,6 ]
Afiukwa, C. A. [2 ]
Orji, O. U. [1 ]
Ezeh, E. M. [3 ]
Ofoke, I. H. [4 ]
Ogbu, C. O. [5 ]
Ugwuja, E. I. [1 ]
Aja, P. M. [1 ,7 ]
机构
[1] Ebonyi State Univ, Dept Biochem, Fac Sci, Abakaliki, Nigeria
[2] Ebonyi State Univ, Dept Biotechnol, Fac Sci, Abakaliki, Nigeria
[3] Caritas Univ, Dept Chem Engn, Fac Engn, Enugu, Nigeria
[4] Madonna Univ, Dept Biochem, Fac Sci, Elele, Rivers, Nigeria
[5] Fed Univ Hlth Sci, Dept Biochem, Otukpo, Benue, Nigeria
[6] Our Savior Inst Sci Agr & Technol, Dept Sci Lab Technol Biochem Option, Enugu, Nigeria
[7] Kampala Int Univ, Fac Biomed Sci, Dept Biochem, Ishaka, Uganda
关键词
PROTEIN-LIGAND DOCKING; DRUG DISCOVERY; MECHANISMS; BINDING; SEARCH; DESIGN; SUPPLEMENTS; METABOLISM; PERMEATION; BACTERIA;
D O I
10.1038/s41598-023-40160-2
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Molecular docking is a computational technique that predicts the binding affinity of ligands to receptor proteins. Although it has potential uses in nutraceutical research, it has developed into a formidable tool for drug development. Bioactive substances called nutraceuticals are present in food sources and can be used in the management of diseases. Finding their molecular targets can help in the creation of disease-specific new therapies. The purpose of this review was to explore molecular docking's application to the study of dietary supplements and disease management. First, an overview of the fundamentals of molecular docking and the various software tools available for docking was presented. The limitations and difficulties of using molecular docking in nutraceutical research are also covered, including the reliability of scoring functions and the requirement for experimental validation. Additionally, there was a focus on the identification of molecular targets for nutraceuticals in numerous disease models, including those for sickle cell disease, cancer, cardiovascular, gut, reproductive, and neurodegenerative disorders. We further highlighted biochemistry pathways and models from recent studies that have revealed molecular mechanisms to pinpoint new nutraceuticals' effects on disease pathogenesis. It is convincingly true that molecular docking is a useful tool for identifying the molecular targets of nutraceuticals in the management of diseases. It may offer information about how nutraceuticals work and support the creation of new therapeutics. Therefore, molecular docking has a bright future in nutraceutical research and has a lot of potentials to lead to the creation of brand-new medicines for the treatment of disease.
引用
收藏
页数:18
相关论文
共 150 条
[1]  
Abdulhussein AJ., 2018, International Journal of Current Research, V10, P75341, DOI DOI 10.24941/IJCR.33164.11.2018
[2]   CHELATING AND FREE-RADICAL SCAVENGING MECHANISMS OF INHIBITORY-ACTION OF RUTIN AND QUERCETIN IN LIPID-PEROXIDATION [J].
AFANASEV, IB ;
DOROZHKO, AI ;
BRODSKII, AV ;
KOSTYUK, VA ;
POTAPOVITCH, AI .
BIOCHEMICAL PHARMACOLOGY, 1989, 38 (11) :1763-1769
[3]   Cucumeropsis mannii seed oil (CMSO) attenuates alterations in testicular biochemistry and histology against Bisphenol a-induced toxicity in male Wister albino rats [J].
Agu, P. C. ;
Aja, P. M. ;
Ugbala, Ezebuilo Ekpono ;
Ogwoni, H. A. ;
Ezeh, E. M. ;
Oscar-Amobi, P. C. ;
Atamgba, Agbor Asuk ;
Ani, O. G. ;
Awoke, J. N. ;
Nwite, F. E. ;
Ukachi, O. U. ;
Orji, O. U. ;
Nweke, P. C. ;
Ugbala, Ejike Ekpono ;
Ewa, G. O. ;
Igwenyi, I. O. ;
Egwu, C. O. ;
Alum, E. U. ;
Chukwu, D. C. ;
Famurewa, A. C. .
HELIYON, 2022, 8 (03)
[4]  
Agu PC., 2023, Niger. J. Biochem. Mol. Biol, V38, P43
[5]  
Ahmad A, 2021, Pakistan Journal of Physical Therapy (PJPT), P01, DOI [10.52229/pjpt.v0i0.1141, 10.1007/978-981-16-4935-6_1, DOI 10.1007/978-981-16-4935-6_1]
[6]  
Ahmadi S, 2016, INT J REPROD BIOMED, V14, P729, DOI 10.29252/ijrm.14.12.729
[7]   Hesperidin abrogates bisphenol A endocrine disruption through binding with fibroblast growth factor 21 (FGF-21), α-amylase and α-glucosidase: an in silico molecular study [J].
Aja, P. M. ;
Awoke, J. N. ;
Agu, P. C. ;
Adegboyega, A. E. ;
Ezeh, E. M. ;
Igwenyi, I. O. ;
Orji, O. U. ;
Ani, O. G. ;
Ale, B. A. ;
Ibiam, U. A. .
JOURNAL OF GENETIC ENGINEERING AND BIOTECHNOLOGY, 2022, 20 (01)
[8]  
Aja PM, 2021, B NATL RES CENT, V45, DOI [10.1186/s42269-021-00554-6, 10.1186/s42269-021-00554-6, DOI 10.1186/S42269-021-00554-6]
[9]  
Aja PM., 2022, Nigerian Journal of Biochemistry and Molecular Biology, V37, P272
[10]   Female infertility and herbal medicine: An overview of the new findings [J].
Akbaribazm, Mohsen ;
Goodarzi, Nader ;
Rahimi, Mohsen .
FOOD SCIENCE & NUTRITION, 2021, 9 (10) :5869-5882