Understanding dynamics in coarse-grained models. III. Roles of rotational motion and translation-rotation coupling in coarse-grained dynamics

被引:6
作者
Jin, Jaehyeok [1 ,2 ,3 ]
Lee, Eok Kyun [4 ]
Voth, Gregory A. [1 ,2 ]
机构
[1] Univ Chicago, Dept Chem, Chicago Ctr Theoret Chem, Inst Biophys Dynam, Chicago, IL 60637 USA
[2] Univ Chicago, James Franck Inst, Chicago, IL 60637 USA
[3] Columbia Univ, Dept Chem, New York, NY 10027 USA
[4] Korea Adv Inst Sci & Technol KAIST, Dept Chem, Daejeon 34141, South Korea
基金
美国国家科学基金会;
关键词
EQUATION-OF-STATE; ANGULAR-MOMENTUM FLUCTUATIONS; SELF-DIFFUSION; MOLECULAR-DYNAMICS; THERMODYNAMIC PROPERTIES; TRANSPORT-COEFFICIENTS; PERTURBATION-THEORY; DENSE FLUIDS; ENTROPY; LIQUID;
D O I
10.1063/5.0167158
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
This paper series aims to establish a complete correspondence between fine-grained (FG) and coarse-grained (CG) dynamics by way of excess entropy scaling (introduced in Paper I). While Paper II successfully captured translational motions in CG systems using a hard sphere mapping, the absence of rotational motions in single-site CG models introduces differences between FG and CG dynamics. In this third paper, our objective is to faithfully recover atomistic diffusion coefficients from CG dynamics by incorporating rotational dynamics. By extracting FG rotational diffusion, we unravel, for the first time reported to our knowledge, a universality in excess entropy scaling between the rotational and translational diffusion. Once the missing rotational dynamics are integrated into the CG translational dynamics, an effective translation-rotation coupling becomes essential. We propose two different approaches for estimating this coupling parameter: the rough hard sphere theory with acentric factor (temperature-independent) or the rough Lennard-Jones model with CG attractions (temperature-dependent). Altogether, we demonstrate that FG diffusion coefficients can be recovered from CG diffusion coefficients by (1) incorporating "entropy-free" rotational diffusion with translation-rotation coupling and (2) recapturing the missing entropy. Our findings shed light on the fundamental relationship between FG and CG dynamics in molecular fluids.
引用
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页数:16
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