Crystal structure of thermostable acetaldehyde dehydrogenase from the hyperthermophilic archaeon Sulfolobus tokodaii

被引:1
作者
Mine, Shohei [1 ]
Nakabayashi, Makoto [2 ]
Ishikawa, Kazuhiko [1 ,3 ]
机构
[1] Natl Inst Adv Ind Sci & Technol, Biomed Res Inst, I-8-31 Midorigaoka, Ikeda, Osaka 5638577, Japan
[2] Osaka Ohtani Univ, Fac Pharm, 3-11-1 Nishikiori Kita, Tondabayashi, Osaka 5848540, Japan
[3] Matsutani Chem Ind Co Ltd, Rare Sugar & Enzyme Res, Dept 1, R&D, 5-3 Kitaitami, Itami, Hyogo 6648508, Japan
来源
ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS | 2023年 / 79卷
关键词
thermostability; acetaldehyde dehydrogenase; aldehydes; archaea; Sulfolobus tokodaii; ALDEHYDE DEHYDROGENASE; PYROCOCCUS-HORIKOSHII; ENDOCELLULASE; PROTEIN;
D O I
10.1107/S2053230X23004430
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Aldehyde dehydrogenase (ALDH) is widely distributed in nature and its characteristics have been examined. ALDH plays an important role in aldehyde detoxification. Sources of aldehydes include incomplete combustion and emissions from paints, linoleum and varnishes in the living environment. Acetaldehyde is also considered to be carcinogenic and toxic. Thermostable ALDH from the hyperthermophilic archaeon Sulfolobus tokodaii exhibits high activity towards acetaldehyde and has potential applications as a biosensor for acetaldehyde. Thermostable ALDH displays a unique and wide adaptability. Therefore, its crystal structure can provide new insights into the catalytic mechanism and potential applications of ALDHs. However, a crystal structure of a thermostable ALDH exhibiting high activity towards acetaldehyde has not been reported to date. In this study, crystals of recombinant thermostable ALDH from S. tokodaii were prepared and the crystal structure of its holo form was determined. A crystal of the enzyme was prepared and its structure in complex with NADP was determined at a resolution of 2.2 angstrom. This structural analysis may facilitate further studies on catalytic mechanisms and applications.
引用
收藏
页码:159 / 165
页数:7
相关论文
共 24 条
  • [11] Complete saccharification of β-glucan using hyperthermophilic endocellulase and β-glucosidase from Pyrococcus furiosus
    Kataoka, Misumi
    Ishikawa, Kazuhiko
    [J]. BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY, 2014, 78 (09) : 1537 - 1541
  • [12] Functional analysis of hyperthermophilic endocellulase from Pyrococcus horikoshii by crystallographic snapshots
    Kim, Han-Woo
    Ishikawa, Kazuhiko
    [J]. BIOCHEMICAL JOURNAL, 2011, 437 : 223 - 230
  • [13] Aldehyde dehydrogenase-2 as a therapeutic target
    Kimura, Mitsuru
    Yokoyama, Akira
    Higuchi, Susumu
    [J]. EXPERT OPINION ON THERAPEUTIC TARGETS, 2019, 23 (11) : 955 - 966
  • [14] Molecular characterization of a thermostable aldehyde dehydrogenase (ALDH) from the hyperthermophilic archaeon Sulfolobus tokodaii strain 7
    Liu, Tianming
    Hao, Lujiang
    Wang, Ruiming
    Liu, Bo
    [J]. EXTREMOPHILES, 2013, 17 (01) : 181 - 190
  • [15] Structure validation by Cα geometry:: φ,ψ and Cβ deviation
    Lovell, SC
    Davis, IW
    Adrendall, WB
    de Bakker, PIW
    Word, JM
    Prisant, MG
    Richardson, JS
    Richardson, DC
    [J]. PROTEINS-STRUCTURE FUNCTION AND GENETICS, 2003, 50 (03): : 437 - 450
  • [16] RELATION BETWEEN GAMMA- AND ALPHA-CHYMOTRYPSIN
    MATTHEWS, BW
    COHEN, GH
    SILVERTON, E
    BRAXTON, H
    DAVIES, DR
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1968, 36 (01) : 179 - &
  • [17] Highly sensitive and rapid gas biosensor for formaldehyde based on an enzymatic cycling system
    Monkawa, Akira
    Gessei, Tomoko
    Takimoto, Yuki
    Jo, Nobuaki
    Wada, Toshiaki
    Sanari, Nobuyuki
    [J]. SENSORS AND ACTUATORS B-CHEMICAL, 2015, 210 : 241 - 247
  • [18] REFMAC5 for the refinement of macromolecular crystal structures
    Murshudov, Garib N.
    Skubak, Pavol
    Lebedev, Andrey A.
    Pannu, Navraj S.
    Steiner, Roberto A.
    Nicholls, Robert A.
    Winn, Martyn D.
    Long, Fei
    Vagin, Alexei A.
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2011, 67 : 355 - 367
  • [19] Processing of X-ray diffraction data collected in oscillation mode
    Otwinowski, Z
    Minor, W
    [J]. MACROMOLECULAR CRYSTALLOGRAPHY, PT A, 1997, 276 : 307 - 326
  • [20] Relationships within the aldehyde dehydrogenase extended family
    Perozich, J
    Nicholas, H
    Wang, BC
    Lindahl, R
    Hempel, J
    [J]. PROTEIN SCIENCE, 1999, 8 (01) : 137 - 146