Interactome of Long Non-Coding RNAs: Transcriptomic Expression Patterns and Shaping Cancer Cell Phenotypes

被引:5
作者
DeSouza, Nicole R. [1 ]
Quaranto, Danielle [1 ]
Carnazza, Michelle [1 ]
Jarboe, Tara [1 ]
Tiwari, Raj K. [1 ,2 ]
Geliebter, Jan [1 ,2 ]
机构
[1] New York Med Coll, Dept Pathol Microbiol & Immunol, Valhalla, NY 10595 USA
[2] New York Med Coll, Dept Otolaryngol, Valhalla, NY 10591 USA
关键词
noncoding RNA; microRNA; piRNA; lncRNA; circRNA; disease pathogenesis; developmental defects; cancer; MIRNA-TARGET INTERACTIONS; DIFFERENTIAL EXPRESSION; PROGNOSTIC-FACTOR; GENE-EXPRESSION; WEB SERVER; LNCRNA; TUMORIGENESIS; RESISTANCE; PREDICTION; KNOCKDOWN;
D O I
10.3390/ijms24129914
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
RNA biology has gained extensive recognition in the last two decades due to the identification of novel transcriptomic elements and molecular functions. Cancer arises, in part, due to the accumulation of mutations that greatly contribute to genomic instability. However, the identification of differential gene expression patterns of wild-type loci has exceeded the boundaries of mutational study and has significantly contributed to the identification of molecular mechanisms that drive carcinogenic transformation. Non-coding RNA molecules have provided a novel avenue of exploration, providing additional routes for evaluating genomic and epigenomic regulation. Of particular focus, long non-coding RNA molecule expression has been demonstrated to govern and direct cellular activity, thus evidencing a correlation between aberrant long non-coding RNA expression and the pathological transformation of cells. lncRNA classification, structure, function, and therapeutic utilization have expanded cancer studies and molecular targeting, and understanding the lncRNA interactome aids in defining the unique transcriptomic signatures of cancer cell phenotypes.
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页数:19
相关论文
共 88 条
[41]   microRNA-9 targets the long non-coding RNA MALAT1 for degradation in the nucleus [J].
Leucci, Eleonora ;
Patella, Francesca ;
Waage, Johannes ;
Holmstrom, Kim ;
Lindow, Morten ;
Porse, Bo ;
Kauppinen, Sakari ;
Lund, Anders H. .
SCIENTIFIC REPORTS, 2013, 3
[42]   MALAT1 regulates miR-34a expression in melanoma cells [J].
Li, Fei ;
Li, Xinji ;
Qiao, Li ;
Liu, Wen ;
Xu, Chengshan ;
Wang, Xiaogang .
CELL DEATH & DISEASE, 2019, 10 (6)
[43]   LncTar: a tool for predicting the RNA targets of long noncoding RNAs [J].
Li, Jianwei ;
Ma, Wei ;
Zeng, Pan ;
Wang, Junyi ;
Geng, Bin ;
Yang, Jichun ;
Cui, Qinghua .
BRIEFINGS IN BIOINFORMATICS, 2015, 16 (05) :806-812
[44]  
Li L, 2021, AGING-US, V13, P23842, DOI 10.18632/aging.203523
[45]  
Li Q, 2021, METHODS MOL BIOL, V2284, P193, DOI 10.1007/978-1-0716-1307-8_11
[46]  
Lin Hsin-Chen, 2018, Oncotarget, V9, P10470, DOI 10.18632/oncotarget.23732
[47]   LncRNA H19 over-expression inhibited Th17 cell differentiation to relieve endometriosis through miR-342-3p/IER3 pathway [J].
Liu, Zheying ;
Liu, Liya ;
Zhong, Yun ;
Cai, Mingbo ;
Gao, Junbi ;
Tan, Chaoyue ;
Han, Xiaoxiao ;
Guo, Ruixia ;
Han, Liping .
CELL AND BIOSCIENCE, 2019, 9 (01)
[48]   Crosstalk Between Long Non-coding RNAs, Micro-RNAs and mRNAs: Deciphering Molecular Mechanisms of Master Regulators in Cancer [J].
Lopez-Urrutia, Eduardo ;
Bustamante Montes, Lilia P. ;
de Guevara Cervantes, Diego Ladron ;
Perez-Plasencia, Carlos ;
Campos-Parra, Alma D. .
FRONTIERS IN ONCOLOGY, 2019, 9
[49]   Biodegradable Lipids Enabling Rapidly Eliminated Lipid Nanoparticles for Systemic Delivery of RNAi Therapeutics [J].
Maier, Martin A. ;
Jayaraman, Muthusamy ;
Matsuda, Shigeo ;
Liu, Ju ;
Barros, Scott ;
Querbes, William ;
Tam, Ying K. ;
Ansell, Steven M. ;
Kumar, Varun ;
Qin, June ;
Zhang, Xuemei ;
Wang, Qianfan ;
Panesar, Sue ;
Hutabarat, Renta ;
Carioto, Mary ;
Hettinger, Julia ;
Kandasamy, Pachamuthu ;
Butler, David ;
Rajeev, Kallanthottathil G. ;
Pang, Bo ;
Charisse, Klaus ;
Fitzgerald, Kevin ;
Mui, Barbara L. ;
Du, Xinyao ;
Cullis, Pieter ;
Madden, Thomas D. ;
Hope, Michael J. ;
Manoharan, Muthiah ;
Akinc, Akin .
MOLECULAR THERAPY, 2013, 21 (08) :1570-1578
[50]   IntaRNA 2.0: enhanced and customizable prediction of RNA-RNA interactions [J].
Mann, Martin ;
Wright, Patrick R. ;
Backofen, Rolf .
NUCLEIC ACIDS RESEARCH, 2017, 45 (W1) :W435-W439