Interactome of Long Non-Coding RNAs: Transcriptomic Expression Patterns and Shaping Cancer Cell Phenotypes

被引:5
作者
DeSouza, Nicole R. [1 ]
Quaranto, Danielle [1 ]
Carnazza, Michelle [1 ]
Jarboe, Tara [1 ]
Tiwari, Raj K. [1 ,2 ]
Geliebter, Jan [1 ,2 ]
机构
[1] New York Med Coll, Dept Pathol Microbiol & Immunol, Valhalla, NY 10595 USA
[2] New York Med Coll, Dept Otolaryngol, Valhalla, NY 10591 USA
关键词
noncoding RNA; microRNA; piRNA; lncRNA; circRNA; disease pathogenesis; developmental defects; cancer; MIRNA-TARGET INTERACTIONS; DIFFERENTIAL EXPRESSION; PROGNOSTIC-FACTOR; GENE-EXPRESSION; WEB SERVER; LNCRNA; TUMORIGENESIS; RESISTANCE; PREDICTION; KNOCKDOWN;
D O I
10.3390/ijms24129914
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
RNA biology has gained extensive recognition in the last two decades due to the identification of novel transcriptomic elements and molecular functions. Cancer arises, in part, due to the accumulation of mutations that greatly contribute to genomic instability. However, the identification of differential gene expression patterns of wild-type loci has exceeded the boundaries of mutational study and has significantly contributed to the identification of molecular mechanisms that drive carcinogenic transformation. Non-coding RNA molecules have provided a novel avenue of exploration, providing additional routes for evaluating genomic and epigenomic regulation. Of particular focus, long non-coding RNA molecule expression has been demonstrated to govern and direct cellular activity, thus evidencing a correlation between aberrant long non-coding RNA expression and the pathological transformation of cells. lncRNA classification, structure, function, and therapeutic utilization have expanded cancer studies and molecular targeting, and understanding the lncRNA interactome aids in defining the unique transcriptomic signatures of cancer cell phenotypes.
引用
收藏
页数:19
相关论文
共 88 条
[1]   Phase Ib Clinical Trial of IGV-001 for Patients with Newly Diagnosed Glioblastoma [J].
Andrews, David W. ;
Judy, Kevin D. ;
Scott, Charles B. ;
Garcia, Samantha ;
Harshyne, Larry A. ;
Kenyon, Lawrence ;
Talekar, Kiran ;
Flanders, Adam ;
Atsina, Kofi-Buaku ;
Kim, Lyndon ;
Martinez, Nina ;
Shi, Wenyin ;
Werner-Wasik, Maria ;
Liu, Haisong ;
Prosniak, Mikhail ;
Curtis, Mark ;
Kean, Rhonda ;
Ye, Donald Y. ;
Bongiorno, Emily ;
Sauma, Sami ;
Exley, Mark A. ;
Pigott, Kara ;
Hooper, D. Craig .
CLINICAL CANCER RESEARCH, 2021, 27 (07) :1912-1922
[2]   MicroRNAs and Xenobiotic Toxicity: An Overview [J].
Balasubramanian, Satheeswaran ;
Gunasekaran, Kanmani ;
Sasidharan, Saranyadevi ;
Mathan, Vignesh Jeyamanickavel ;
Perumal, Ekambaram .
TOXICOLOGY REPORTS, 2020, 7 :583-595
[3]   Circular RNA circ-ZKSCAN1 inhibits bladder cancer progression through miR-1178-3p/p21 axis and acts as a prognostic factor of recurrence [J].
Bi, Junming ;
Liu, Hongwei ;
Dong, Wei ;
Xie, Weibin ;
He, Qingqing ;
Cai, Zijian ;
Huang, Jian ;
Lin, Tianxin .
MOLECULAR CANCER, 2019, 18 (01)
[4]  
Birney E., 2007, Nature, V447, P799, DOI DOI 10.1038/NATURE05874
[5]   TargetFinder: a software for antisense oligonucleotide target site selection based on MAST and secondary structures of target mRNA [J].
Bo, XC ;
Wang, SQ .
BIOINFORMATICS, 2005, 21 (08) :1401-1402
[6]   IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions [J].
Busch, Anke ;
Richter, Andreas S. ;
Backofen, Rolf .
BIOINFORMATICS, 2008, 24 (24) :2849-2856
[7]   The IncRNA HNF1A-AS1 is a negative prognostic factor and promotes tumorigenesis in osteosarcoma [J].
Cai, Lijun ;
Lv, Jinhan ;
Zhang, Yinquan ;
Li, Junhong ;
Wang, Yinong ;
Yang, Huilin .
JOURNAL OF CELLULAR AND MOLECULAR MEDICINE, 2017, 21 (11) :2654-2662
[8]   The cBio Cancer Genomics Portal: An Open Platform for Exploring Multidimensional Cancer Genomics Data [J].
Cerami, Ethan ;
Gao, Jianjiong ;
Dogrusoz, Ugur ;
Gross, Benjamin E. ;
Sumer, Selcuk Onur ;
Aksoy, Buelent Arman ;
Jacobsen, Anders ;
Byrne, Caitlin J. ;
Heuer, Michael L. ;
Larsson, Erik ;
Antipin, Yevgeniy ;
Reva, Boris ;
Goldberg, Arthur P. ;
Sander, Chris ;
Schultz, Nikolaus .
CANCER DISCOVERY, 2012, 2 (05) :401-404
[9]  
Cervantes A, 2011, J CLIN ONCOL, V29
[10]   miRNet 2.0: network-based visual analytics for miRNA functional analysis and systems biology [J].
Chang, Le ;
Zhou, Guangyan ;
Soufan, Othman ;
Xia, Jianguo .
NUCLEIC ACIDS RESEARCH, 2020, 48 (W1) :W244-W251