The Complete Genome Sequence Resource of Rhizospheric Soil-Derived Bacillus velezensis Yao, with Biocontrol Potential Against Fusarium solani-Induced Pepper Root Rot

被引：4

作者：

Pei, Dongli ^{[1
]}

Zhang, Qingchen ^{[1
]}

Zhu, Xiaoqin ^{[1
]}

Yao, Xiaolin ^{[1
]}

Zhang, Lei ^{[2
]}

机构：

[1] Shangqiu Normal Univ, Coll Bioloby & Food, Henan Prov Engn Res Ctr Dev & Applicat Characteris, Shangqiu 476000, Peoples R China

[2] Henan Acad Agr Sci, Inst Crops Mol Breeding, Zhengzhou 450002, Peoples R China

来源：

PHYTOPATHOLOGY | 2023年 / 113卷 / 03期

关键词：

biological control; microbe-genome sequencing; GENES;

D O I：

10.1094/PHYTO-03-22-0101-A

中图分类号：

Q94 [植物学];

学科分类号：

071001 ;

摘要：

The pepper rhizospheric soil-derived Bacillus velezensis Yao from the Shangqiu region of the Henan province in China possesses antagonistic activity against Fusarium solani, which causes pepper root rot. In this report, we introduced the entire genomic sequence of B. velezensis Yao, which is 3,951,864 bp long, with 46.61% G+C content, and 4,097 genes. Using antiSMASH analysis, we predicted 12 gene clusters that encode for secondary antimicrobial metabolites and multiple genes that regulate plant bacterial interactions. The B. velezensis Yao genome data may be a valuable resource as this strain may serve as an effective biocontrol agent against pepper root rot.

引用

收藏

页码：580 / 583

页数：4

相关论文

共 17 条

[1] Bacillus velezensis: phylogeny, useful applications<bold>,</bold> and avenues for exploitation [J].

Adeniji, Adetomiwa Ayodele ;

Loots, Du Toit ;

Babalola, Olubukola Oluranti .

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 2019, 103 (09) :3669-3682

[2] Selecting lipopeptide-producing, Fusarium-suppressing Bacillus spp.: Metabolomic and genomic probing of Bacillus velezensis NWUMFkBS10.5 [J].

Adeniji, Adetomiwa Ayodele ;

Aremu, Oluwole Samuel ;

Babalola, Olubukola Oluranti .

MICROBIOLOGYOPEN, 2019, 8 (06)

[3] antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline [J].

Blin, Kai ;

Shaw, Simon ;

Steinke, Katharina ;

Villebro, Rasmus ;

Ziemert, Nadine ;

Lee, Sang Yup ;

Medema, Marnix H. ;

Weber, Tilmann .

NUCLEIC ACIDS RESEARCH, 2019, 47 (W1) :W81-W87

[4] Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory [J].

Chaisson, Mark J. ;

Tesler, Glenn .

BMC BIOINFORMATICS, 2012, 13

[5]

Chin CS, 2013, NAT METHODS, V10, P563, DOI [10.1038/NMETH.2474, 10.1038/nmeth.2474]

[6] Identifying bacterial genes and endosymbiont DNA with Glimmer [J].

Delcher, Arthur L. ;

Bratke, Kirsten A. ;

Powers, Edwin C. ;

Salzberg, Steven L. .

BIOINFORMATICS, 2007, 23 (06) :673-679

[7] Bacillus velezensis is not a later heterotypic synonym of Bacillus amyloliquefaciens; Bacillus methylotrophicus, Bacillus amyloliquefaciens subsp plantarum and 'Bacillus oryzicola' are later heterotypic synonyms of Bacillus velezensis based on phylogenomics [J].

Dunlap, Christopher A. ;

Kim, Soo-Jin ;

Kwon, Soon-Wo ;

Rooney, Alejandro P. .

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2016, 66 :1212-1217

[8] Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation [J].

Koren, Sergey ;

Walenz, Brian P. ;

Berlin, Konstantin ;

Miller, Jason R. ;

Bergman, Nicholas H. ;

Phillippy, Adam M. .

GENOME RESEARCH, 2017, 27 (05) :722-736

[9] Structural and functional characterization of gene clusters directing nonribosomal synthesis of bioactive cyclic lipopeptides in Bacillus amyloliquefaciens strain FZB42 [J].

Koumoutsi, A ;

Chen, XH ;

Henne, A ;

Liesegang, H ;

Hitzeroth, G ;

Franke, P ;

Vater, J ;

Borriss, R .

JOURNAL OF BACTERIOLOGY, 2004, 186 (04) :1084-1096

[10] Circos: An information aesthetic for comparative genomics [J].

Krzywinski, Martin ;

Schein, Jacqueline ;

Birol, Inanc ;

Connors, Joseph ;

Gascoyne, Randy ;

Horsman, Doug ;

Jones, Steven J. ;

Marra, Marco A. .

GENOME RESEARCH, 2009, 19 (09) :1639-1645