Genome-wide studies in prostate cancer poised liquid biopsy as a molecular discovery tool

被引:2
作者
Lo, Nicholas [1 ]
He, Housheng Hansen [1 ,2 ]
Chen, Sujun [1 ,3 ,4 ]
机构
[1] Univ Hlth Network, Princess Margaret Canc Ctr, Toronto, ON, Canada
[2] Univ Toronto, Dept Med Biophys, Toronto, ON, Canada
[3] Sichuan Univ, West China Hosp 4, West China Sch Publ Hlth, Chengdu, Peoples R China
[4] Sichuan Univ, State Key Lab Biotherapy, Chengdu, Peoples R China
关键词
prostate cancer; liquid biopsy; deep genomic sequencing; genome-wide methylation analysis; disease progression; CIRCULATING TUMOR-CELLS; ABIRATERONE ACETATE; DNA; BIOMARKER; GENE; SURVIVAL; 5-HYDROXYMETHYLCYTOSINE; MICRORNAS; TRIALS; ASSAY;
D O I
10.3389/fonc.2023.1185013
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Liquid biopsy is emerging as an intriguing tool in clinical disease detection and monitoring. Compared to a standard tissue biopsy, performing a liquid biopsy incurs minimal invasiveness, captures comprehensive disease representation, and can be more sensitive at an early stage. Recent genome-wide liquid biopsy studies in prostate cancer analyzing plasma samples have provided insights into the genome and epigenome dynamics during disease progression. In-depth genomic sequencing can offer a comprehensive understanding of cancer evolution, enabling more accurate clinical decision-making. Furthermore, exploring beyond the DNA sequence itself provides opportunities to investigate the regulatory mechanisms underlying various disease phenotypes. Here, we summarize these advances and offer prospects for their future application.
引用
收藏
页数:6
相关论文
共 64 条
[1]   Clinical and Genomic Characterization of Treatment-Emergent Small-Cell Neuroendocrine Prostate Cancer: A Multi-institutional Prospective Study [J].
Aggarwal, Rahul ;
Huang, Jiaoti ;
Alumkal, Joshi J. ;
Zhang, Li ;
Feng, Felix Y. ;
Thomas, George V. ;
Weinstein, Alana S. ;
Friedl, Verena ;
Zhang, Can ;
Witte, Owen N. ;
Lloyd, Paul ;
Gleave, Martin ;
Evans, Christopher P. ;
Youngren, Jack ;
Beer, Tomasz M. ;
Rettig, Matthew ;
Wong, Christopher K. ;
True, Lawrence ;
Foye, Adam ;
Playdle, Denise ;
Ryan, Charles J. ;
Lara, Primo ;
Chi, Kim N. ;
Uzunangelov, Vlado ;
Sokolov, Artem ;
Newton, Yulia ;
Beltran, Himisha ;
Demichelis, Francesca ;
Rubin, Mark A. ;
Stuart, Joshua M. ;
Small, Eric J. .
JOURNAL OF CLINICAL ONCOLOGY, 2018, 36 (24) :2492-+
[2]   Circulating Tumor DNA Genomics Correlate with Resistance to Abiraterone and Enzalutamide in Prostate Cancer [J].
Annala, Matti ;
Vandekerkhove, Gillian ;
Khalaf, Daniel ;
Taavitsainen, Sinja ;
Beja, Kevin ;
Warner, Evan W. ;
Sunderland, Katherine ;
Kollmannsberger, Christian ;
Eigl, Bernhard J. ;
Finch, Daygen ;
Oja, Conrad D. ;
Vergidis, Joanna ;
Zulfiqar, Muhammad ;
Azad, Arun A. ;
Nykter, Matti ;
Gleave, Martin E. ;
Wyatt, Alexander W. ;
Chi, Kim N. .
CANCER DISCOVERY, 2018, 8 (04) :444-457
[3]   Circulating tumor DNA profile recognizes transformation to castration-resistant neuroendocrine prostate cancer [J].
Beltran, Himisha ;
Romanel, Alessandro ;
Conteduca, Vincenza ;
Casiraghi, Nicola ;
Sigouros, Michael ;
Franceschini, Gian Marco ;
Orlando, Francesco ;
Fedrizzi, Tarcisio ;
Ku, Sheng-Yu ;
Dann, Emma ;
Alonso, Alicia ;
Mosquera, Juan Miguel ;
Sboner, Andrea ;
Xiang, Jenny ;
Elemento, Olivier ;
Nanus, David M. ;
Tagawa, Scott T. ;
Benelli, Matteo ;
Demichelis, Francesca .
JOURNAL OF CLINICAL INVESTIGATION, 2020, 130 (04) :1653-1668
[4]   Epigenetic Analysis of Circulating Tumor DNA in Localized and Metastatic Prostate Cancer: Evaluation of Clinical Biomarker Potential [J].
Bjerre, Marianne Trier ;
Norgaard, Maibritt ;
Larsen, Ole Halfdan ;
Jensen, Sarah Ostrup ;
Strand, Siri H. ;
Ostergren, Peter ;
Fode, Mikkel ;
Fredsoe, Jacob ;
Ulhoi, Benedicte Parm ;
Mortensen, Martin Morck ;
Jensen, Jorgen Bjerggaard ;
Borre, Michael ;
Sorensen, Karina D. .
CELLS, 2020, 9 (06)
[5]  
Bussemakers MJG, 1999, CANCER RES, V59, P5975
[6]   The cell-free DNA methylome captures distinctions between localized and metastatic prostate tumors [J].
Chen, Sujun ;
Petricca, Jessica ;
Ye, Wenbin ;
Guan, Jiansheng ;
Zeng, Yong ;
Cheng, Nicholas ;
Gong, Linsey ;
Shen, Shu Yi ;
Hua, Junjie T. ;
Crumbaker, Megan ;
Fraser, Michael ;
Liu, Stanley ;
Bratman, Scott, V ;
van der Kwast, Theodorus ;
Pugh, Trevor ;
Joshua, Anthony M. ;
De Carvalho, Daniel D. ;
Chi, Kim N. ;
Awadalla, Philip ;
Ji, Guoli ;
Feng, Felix ;
Wyatt, Alexander W. ;
He, Housheng Hansen .
NATURE COMMUNICATIONS, 2022, 13 (01)
[7]   Prognostic Significance of Blood-Based Multi-cancer Detection in Plasma Cell-Free DNA [J].
Chen, Xiaoji ;
Dong, Zhao ;
Hubbell, Earl ;
Kurtzman, Kathryn N. ;
Oxnard, Geoffrey R. ;
Venn, Oliver ;
Melton, Collin ;
Clarke, Christina A. ;
Shaknovich, Rita ;
Ma, Ting ;
Meixiong, Gerry ;
Seiden, Michael V. ;
Klein, Eric A. ;
Fung, Eric T. ;
Liu, Minetta C. .
CLINICAL CANCER RESEARCH, 2021, 27 (15) :4221-4229
[8]   Clinical Relevance of Circulating Tumor Cells in Prostate Cancer Management [J].
Cieslikowski, Wojciech A. ;
Antczak, Andrzej ;
Nowicki, Michal ;
Zabel, Maciej ;
Budna-Tukan, Joanna .
BIOMEDICINES, 2021, 9 (09)
[9]   Early detection of the major male cancer types in blood-based liquid biopsies using a DNA methylation panel [J].
Constancio, Vera ;
Nunes, Sandra P. ;
Moreira-Barbosa, Catarina ;
Freitas, Rui ;
Oliveira, Jorge ;
Pousa, Ines ;
Oliveira, Julio ;
Soares, Marta ;
Dias, Carlos Goncalves ;
Dias, Teresa ;
Antunes, Luis ;
Henrique, Rui ;
Jeronimo, Carmen .
CLINICAL EPIGENETICS, 2019, 11 (01)
[10]   Androgen receptor gene status in plasma DNA associates with worse outcome on enzalutamide or abiraterone for castration-resistant prostate cancer: a multi-institution correlative biomarker study [J].
Conteduca, V. ;
Wetterskog, D. ;
Sharabiani, M. T. A. ;
Grande, E. ;
Fernandez-Perez, M. P. ;
Jayaram, A. ;
Salvi, S. ;
Castellano, D. ;
Romanel, A. ;
Lolli, C. ;
Casadio, V. ;
Gurioli, G. ;
Amadori, D. ;
Font, A. ;
Vazquez-Estevez, S. ;
Gonzalez del Alba, A. ;
Mellado, B. ;
Fernandez-Calvo, O. ;
Mendez-Vidal, M. J. ;
Climent, M. A. ;
Duran, I. ;
Gallardo, E. ;
Rodriguez, A. ;
Santander, C. ;
Saez, M. I. ;
Puente, J. ;
Tandefelt, D. Gasi ;
Wingate, A. ;
Dearnaley, D. ;
Demichelis, F. ;
De Giorgi, U. ;
Gonzalez-Billalabeitia, E. ;
Attard, G. .
ANNALS OF ONCOLOGY, 2017, 28 (07) :1508-1516