DNA computational device-based smart biosensors

被引:13
作者
Cao, Mengyao [1 ]
Xiong, Xiewei [1 ]
Zhu, Yun [1 ]
Xiao, Mingshu [1 ]
Li, Li [1 ]
Pei, Hao [1 ]
机构
[1] East China Normal Univ, Shanghai Frontiers Sci Ctr Genome Editing & Cell T, Sch Chem & Mol Engn, Shanghai Key Lab Green Chem & Chem Proc, 500 Dongchuan Rd, Shanghai 200241, Peoples R China
关键词
DNA nanotechnology; Molecular computing; Smart biosensor; Cell surface engineering; HYBRIDIZATION CHAIN-REACTION; MICRORNA DETECTION; AMPLIFICATION STRATEGY; MULTIPLEX DETECTION; MAMMALIAN-CELLS; QUANTUM DOTS; LABEL-FREE; TOEHOLD; NANOSTRUCTURE; NANOMACHINE;
D O I
10.1016/j.trac.2022.116911
中图分类号
O65 [分析化学];
学科分类号
070302 ; 081704 ;
摘要
During the past decade, DNA computing has been rapidly developed and made continuous progress. Based on typical DNA functional motifs, DNA computational devices can perform diverse powerful computational functions, such as simple Boolean logics and sophisticated neural network algorithms. Thus, DNA computer is widely regarded as one of the most excellent next-generation molecular com-puters performing Boolean logic. Benefiting from DNAs' inherent properties of biocompatibility, low-cost, ease of synthesis, and sequence programmability, DNA computational devices have shown great potential in various biosensing applications. In this review, we summarize the recent progress in DNA computational devices-based biosensors. Initially, DNA logic circuit-based in vitro biosensing is outlined. Afterwards, the DNA neural network-based in vitro biosensing is reviewed. Further, employing DNA logical circuits for in vivo biosensing and programming cell behaviors is also elaborated. Finally, we discuss future challenges and offer some insights on potential directions of DNA computational device-based smart biosensors.(c) 2023 Elsevier B.V. All rights reserved.
引用
收藏
页数:10
相关论文
共 133 条
[1]   Application of hairpin DNA-based biosensors with various signal amplification strategies in clinical diagnosis [J].
Abolhasan, Rozita ;
Mehdizadeh, Amir ;
Rashidi, Mohammad Reza ;
Aghebati-Maleki, Leili ;
Yousefi, Mehdi .
BIOSENSORS & BIOELECTRONICS, 2019, 129 :164-174
[2]   Rolling circle amplification: a versatile tool for chemical biology, materials science and medicine [J].
Ali, M. Monsur ;
Li, Feng ;
Zhang, Zhiqing ;
Zhang, Kaixiang ;
Kang, Dong-Ku ;
Ankrum, James A. ;
Le, X. Chris ;
Zhao, Weian .
CHEMICAL SOCIETY REVIEWS, 2014, 43 (10) :3324-3341
[3]   Programmable single-cell mammalian biocomputers [J].
Auslaender, Simon ;
Auslaender, David ;
Mueller, Marius ;
Wieland, Markus ;
Fussenegger, Martin .
NATURE, 2012, 487 (7405) :123-+
[4]  
Brophy JAN, 2014, NAT METHODS, V11, P508, DOI [10.1038/nmeth.2926, 10.1038/NMETH.2926]
[5]   Single-molecule amplification-free multiplexed detection of circulating microRNA cancer biomarkers from serum [J].
Cai, Shenglin ;
Pataillot-Meakin, Thomas ;
Shibakawa, Akifumi ;
Ren, Ren ;
Bevan, Charlotte L. ;
Ladame, Sylvain ;
Ivanov, Aleksandar P. ;
Edel, Joshua B. .
NATURE COMMUNICATIONS, 2021, 12 (01)
[6]   In Vitro Reversible Translation Control Using γPNA Probes [J].
Canady, Taylor D. ;
Telmer, Cheryl A. ;
Oyaghire, Stanley N. ;
Armitage, Bruce A. ;
Bruchez, Marcel P. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2015, 137 (32) :10268-10275
[7]   Multivalent Aptamer-modified DNA Origami as Drug Delivery System for Targeted Cancer Therapy [J].
Cao Mengyao ;
Sun Yueyang ;
Xiao Mingshu ;
Li Li ;
Liu Xiaohui ;
Jin Hong ;
Pei Hao .
CHEMICAL RESEARCH IN CHINESE UNIVERSITIES, 2020, 36 (02) :254-260
[8]   Research progress of DNA walker and its recent applications in biosensor [J].
Chen, Jing ;
Luo, Zewei ;
Sun, Chengjun ;
Huang, Zhijun ;
Zhou, Chen ;
Yin, Shuo ;
Duan, Yixiang ;
Li, Yongxin .
TRAC-TRENDS IN ANALYTICAL CHEMISTRY, 2019, 120
[9]   Logic-Gate-Actuated DNA-Controlled Receptor Assembly for the Programmable Modulation of Cellular Signal Transduction [J].
Chen, Shan ;
Xu, Zhifei ;
Yang, Wen ;
Lin, Xiahui ;
Li, Jingying ;
Li, Juan ;
Yang, Huanghao .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2019, 58 (50) :18186-18190
[10]   Expanding the Rule Set of DNA Circuitry with Associative Toehold Activation [J].
Chen, Xi .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2012, 134 (01) :263-271