Growing Crystals for X-ray Free-Electron Laser Structural Studies of Biomolecules and Their Complexes

被引:0
作者
Nanev, Christo N. [1 ]
Saridakis, Emmanuel [2 ]
Chayen, Naomi E. [3 ]
机构
[1] Rostislaw Kaischew Inst Phys Chem, Bulgarian Acad Sci, Sofia 1113, Bulgaria
[2] Inst Nanosci & Nanotechnol, Natl Ctr Sci Res Demokritos, Athens 15310, Greece
[3] Imperial Coll London, Fac Med, Dept Metab Digest & Reprod, Div Syst Med, London W12 0NN, England
关键词
macromolecular crystallization; crystallization theory; microcrystals; X-ray crystallography; X-ray free-electron laser; serial femtosecond crystallography; EGG-WHITE LYSOZYME; SERIAL CRYSTALLOGRAPHY; CRYSTALLIZATION; GROWTH;
D O I
10.3390/ijms242216336
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Currently, X-ray crystallography, which typically uses synchrotron sources, remains the dominant method for structural determination of proteins and other biomolecules. However, small protein crystals do not provide sufficiently high-resolution diffraction patterns and suffer radiation damage; therefore, conventional X-ray crystallography needs larger protein crystals. The burgeoning method of serial crystallography using X-ray free-electron lasers (XFELs) avoids these challenges: it affords excellent structural data from weakly diffracting objects, including tiny crystals. An XFEL is implemented by irradiating microjets of suspensions of microcrystals with very intense X-ray beams. However, while the method for creating microcrystalline microjets is well established, little attention is given to the growth of high-quality nano/microcrystals suitable for XFEL experiments. In this study, in order to assist the growth of such crystals, we calculate the mean crystal size and the time needed to grow crystals to the desired size in batch crystallization (the predominant method for preparing the required microcrystalline slurries); this time is reckoned theoretically both for microcrystals and for crystals larger than the upper limit of the Gibbs-Thomson effect. The impact of the omnipresent impurities on the growth of microcrystals is also considered quantitatively. Experiments, performed with the model protein lysozyme, support the theoretical predictions.
引用
收藏
页数:17
相关论文
共 36 条
  • [1] Magnetic orientation as a tool to study the initial stage of crystallization of lysozyme
    Ataka, M
    Katoh, E
    Wakayama, NI
    [J]. JOURNAL OF CRYSTAL GROWTH, 1997, 173 (3-4) : 592 - 596
  • [2] Atkins P.W., 2002, Atkins' Physical Chemistry, V7th ed., P1013
  • [3] Successful sample preparation for serial crystallography experiments
    Beale, John H.
    Bolton, Rachel
    Marshall, Stephen A.
    Beale, Emma V.
    Carr, Stephen B.
    Ebrahim, Ali
    Moreno-Chicano, Tadeo
    Hough, Michael A.
    Worrall, Jonathan A. R.
    Tews, Ivo
    Owen, Robin L.
    [J]. JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2019, 52 : 1385 - 1396
  • [4] High-Resolution Protein Structure Determination by Serial Femtosecond Crystallography
    Boutet, Sebastien
    Lomb, Lukas
    Williams, Garth J.
    Barends, Thomas R. M.
    Aquila, Andrew
    Doak, R. Bruce
    Weierstall, Uwe
    DePonte, Daniel P.
    Steinbrener, Jan
    Shoeman, Robert L.
    Messerschmidt, Marc
    Barty, Anton
    White, Thomas A.
    Kassemeyer, Stephan
    Kirian, Richard A.
    Seibert, M. Marvin
    Montanez, Paul A.
    Kenney, Chris
    Herbst, Ryan
    Hart, Philip
    Pines, Jack
    Haller, Gunther
    Gruner, Sol M.
    Philipp, Hugh T.
    Tate, Mark W.
    Hromalik, Marianne
    Koerner, Lucas J.
    van Bakel, Niels
    Morse, John
    Ghonsalves, Wilfred
    Arnlund, David
    Bogan, Michael J.
    Caleman, Carl
    Fromme, Raimund
    Hampton, Christina Y.
    Hunter, Mark S.
    Johansson, Linda C.
    Katona, Gergely
    Kupitz, Christopher
    Liang, Mengning
    Martin, Andrew V.
    Nass, Karol
    Redecke, Lars
    Stellato, Francesco
    Timneanu, Nicusor
    Wang, Dingjie
    Zatsepin, Nadia A.
    Schafer, Donald
    Defever, James
    Neutze, Richard
    [J]. SCIENCE, 2012, 337 (6092) : 362 - 364
  • [5] THE SOLUBILITY OF THE TETRAGONAL FORM OF HEN EGG-WHITE LYSOZYME FROM PH 4.0 TO 5.4
    CACIOPPO, E
    PUSEY, ML
    [J]. JOURNAL OF CRYSTAL GROWTH, 1991, 114 (03) : 286 - 292
  • [6] Femtosecond X-ray protein nanocrystallography
    Chapman, Henry N.
    Fromme, Petra
    Barty, Anton
    White, Thomas A.
    Kirian, Richard A.
    Aquila, Andrew
    Hunter, Mark S.
    Schulz, Joachim
    DePonte, Daniel P.
    Weierstall, Uwe
    Doak, R. Bruce
    Maia, Filipe R. N. C.
    Martin, Andrew V.
    Schlichting, Ilme
    Lomb, Lukas
    Coppola, Nicola
    Shoeman, Robert L.
    Epp, Sascha W.
    Hartmann, Robert
    Rolles, Daniel
    Rudenko, Artem
    Foucar, Lutz
    Kimmel, Nils
    Weidenspointner, Georg
    Holl, Peter
    Liang, Mengning
    Barthelmess, Miriam
    Caleman, Carl
    Boutet, Sebastien
    Bogan, Michael J.
    Krzywinski, Jacek
    Bostedt, Christoph
    Bajt, Sasa
    Gumprecht, Lars
    Rudek, Benedikt
    Erk, Benjamin
    Schmidt, Carlo
    Hoemke, Andre
    Reich, Christian
    Pietschner, Daniel
    Strueder, Lothar
    Hauser, Guenter
    Gorke, Hubert
    Ullrich, Joachim
    Herrmann, Sven
    Schaller, Gerhard
    Schopper, Florian
    Soltau, Heike
    Kuehnel, Kai-Uwe
    Messerschmidt, Marc
    [J]. NATURE, 2011, 470 (7332) : 73 - U81
  • [7] AN AUTOMATED-SYSTEM FOR MICROBATCH PROTEIN CRYSTALLIZATION AND SCREENING
    CHAYEN, NE
    STEWART, PDS
    MAEDER, DL
    BLOW, DM
    [J]. JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1990, 23 : 297 - 302
  • [8] Chernov A.A., 1984, Modern Crystallography III: Crystal Growth, P1
  • [9] Crystallization physics in biomacromolecular solutions
    Chernov, AA
    Segre, PN
    Holmes, AM
    [J]. CRYSTAL GROWTH - FROM FUNDAMENTALS TO TECHNOLOGY, 2004, : 95 - 113
  • [10] Protein crystals and their growth
    Chernov, AA
    [J]. JOURNAL OF STRUCTURAL BIOLOGY, 2003, 142 (01) : 3 - 21