Gut microbiota from patients with COVID-19 cause alterations in mice that resemble post-COVID symptoms

被引:31
作者
de Almeida, Viviani [1 ]
Engel, Daiane F. [2 ]
Ricci, Mayra F. [1 ]
Cruz, Clenio Silva [1 ]
Lopes, Icaro Santos [3 ]
Alves, Daniele Almeida [4 ]
D' Auriol, Mirna [5 ]
Magalhaes, Joao [1 ]
Machado, Elayne C. [1 ]
Rocha, Victor M. [1 ]
Carvalho, Toniana G. [6 ]
Lacerda, Larisse S. B. [7 ]
Pimenta, Jordane C. [7 ]
Aganetti, Mariana [1 ]
Zuccoli, Giuliana S. [8 ]
Smith, Bradley J. [8 ]
Carregari, Victor C. [8 ]
Rosa, Erika da Silva [1 ]
Galvao, Izabela [1 ]
Cassali, Geovanni Dantas [9 ]
Garcia, Cristiana C. [10 ]
Teixeira, Mauro Martins [7 ]
Andre, Leiliane C. [5 ]
Ribeiro, Fabiola Mara [6 ]
Martins, Flaviano S. [11 ]
Saia, Rafael Simone [12 ]
Costa, Vivian Vasconcelos [7 ]
Martins-de-Souza, Daniel [8 ,13 ,14 ,15 ]
Hansbro, Philip M. [16 ,17 ]
Marques, Joao Trindade [4 ,18 ]
Aguiar, Eric R. G. R. [3 ]
Vieira, Angelica T. [1 ,19 ]
机构
[1] Univ Fed Minas Gerais UFMG, Inst Biol Sci, Dept Biochem & Immunol, Lab Microbiota & Immunomodulat, Belo Horizonte, Brazil
[2] Univ Fed Ouro Preto UFOP, Sch Pharm, Dept Clin Anal, Ouro Preto, Brazil
[3] Univ Estadual Santa Cruz UESC, Ctr Biotechnol & Genet, Dept Biol Sci, Lab Virus Bioinformat, Ilheus, Brazil
[4] Univ Fed Minas Gerais UFMG, Inst Biol Sci, Dept Biochem & Immunol, Lab RNA Interference & Antiviral Immun, Belo Horizonte, Brazil
[5] Univ Fed Minas Gerais UFMG, Fac Pharm, Dept Clin & Toxicol Anal, Lab Toxicol, Belo Horizonte, Brazil
[6] Univ Fed Minas Gerais UFMG, Inst Biol Sci, Dept Biochem & Immunol, Lab Neurobiochem, Belo Horizonte, Brazil
[7] Univ Fed Minas Gerais UFMG, Inst Biol Sci, Ctr Res & Dev Drugs, Dept Morphol, Belo Horizonte, Brazil
[8] Univ Estado Campinas UNICAMP, Inst Biol, Dept Biochem & Tissue Biol, Lab Neuroproteom, Campinas, Brazil
[9] Univ Fed Minas Gerais UFMG, Dept Pathol, Lab Comparat Pathol, Belo Horizonte, Brazil
[10] Inst Oswaldo Cruz Fiocruz, Lab Resp Viruses & Measles, Rio de Janeiro, Brazil
[11] Univ Fed Minas Gerais UFMG, Inst Biol Sci, Dept Microbiol, Lab Biotherapeut Agents, Belo Horizonte, Brazil
[12] Univ Sao Paulo, Ribeirao Preto Med Sch, Dept Physiol, Lab Intestinal Physiol, Ribeirao Preto, Brazil
[13] DOR Inst Res & Educ, Sao Paulo, Brazil
[14] Univ Estado Campinas UNICAMP, Expt Med Res Cluster, Campinas, Brazil
[15] Natl Inst Biomarkers Neuropsychiat, Natl Council Sci & Technol Dev, Sao Paulo, Brazil
[16] Univ Technol Sydney, Centenary Inst, Ctr Inflammat, Sydney, Australia
[17] Univ Technol Sydney, Sydney, Australia
[18] Univ Strasbourg, CNRS UPR9022, Strasbourg, France
[19] Univ Fed Minas Gerais UFMG, Inst Biol Sci, Lab Microbiota & Immunomodulat, Av Pres Antonio Carlos,6627, Belo Horizonte, Brazil
关键词
COVID-19; SARS-CoV-2; post-COVID; microbiota; inflammation; antimicrobial-resistance; SARS-COV-2; RNA; INFECTION; MODEL; DISEASE; HUMANS;
D O I
10.1080/19490976.2023.2249146
中图分类号
R57 [消化系及腹部疾病];
学科分类号
摘要
Long-term sequelae of coronavirus disease (COVID)-19 are frequent and of major concern. Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection affects the host gut microbiota, which is linked to disease severity in patients with COVID-19. Here, we report that the gut microbiota of post-COVID subjects had a remarkable predominance of Enterobacteriaceae strains with an antibiotic-resistant phenotype compared to healthy controls. Additionally, short-chain fatty acid (SCFA) levels were reduced in feces. Fecal transplantation from post-COVID subjects to germ-free mice led to lung inflammation and worse outcomes during pulmonary infection by multidrug-resistant Klebsiella pneumoniae. transplanted mice also exhibited poor cognitive performance. Overall, we show prolonged impacts of SARS-CoV-2 infection on the gut microbiota that persist after subjects have cleared the virus. Together, these data demonstrate that the gut microbiota can directly contribute to post-COVID sequelae, suggesting that it may be a potential therapeutic target.
引用
收藏
页数:22
相关论文
共 84 条
[1]   Gut Microbiota Interplay With COVID-19 Reveals Links to Host Lipid Metabolism Among Middle Eastern Populations [J].
Al Bataineh, Mohammad Tahseen ;
Henschel, Andreas ;
Mousa, Mira ;
Daou, Marianne ;
Waasia, Fathimathuz ;
Kannout, Hussein ;
Khalili, Mariam ;
Kayasseh, Mohd Azzam ;
Alkhajeh, Abdulmajeed ;
Uddin, Maimunah ;
Alkaabi, Nawal ;
Tay, Guan K. ;
Feng, Samuel F. ;
Yousef, Ahmed F. ;
Alsafar, Habiba S. .
FRONTIERS IN MICROBIOLOGY, 2021, 12
[2]   Gut Microbiota Disruption in COVID-19 or Post-COVID Illness Association with severity biomarkers: A Possible Role of Pre / Pro-biotics in manipulating microflora [J].
Alharbi, Khalid Saad ;
Singh, Yogendra ;
Almalki, Waleed Hassan ;
Rawat, Sushama ;
Afzal, Obaid ;
Altamimi, Abdulmalik Saleh Alfawaz ;
Kazmi, Imran ;
Al-Abbasi, Fahad A. ;
Alzarea, Sami, I ;
Singh, Sachin Kumar ;
Bhatt, Shvetank ;
Chellappan, Dinesh Kumar ;
Dua, Kamal ;
Gupta, Gaurav .
CHEMICO-BIOLOGICAL INTERACTIONS, 2022, 358
[3]   Microbes, metabolites, and the gut-lung axis [J].
Anh Thu Dang ;
Marsland, Benjamin J. .
MUCOSAL IMMUNOLOGY, 2019, 12 (04) :843-850
[4]   Klebsiella pneumoniae infections in COVID-19 patients: a 2-month retrospective analysis in an Italian hospital [J].
Arcari, Gabriele ;
Raponi, Giammarco ;
Sacco, Federica ;
Bibbolino, Giulia ;
Di Lella, Federica Maria ;
Alessandri, Francesco ;
Coletti, Monica ;
Trancassini, Maria ;
Deales, Alberto ;
Pugliese, Francesco ;
Antonelli, Guido ;
Carattoli, Alessandra .
INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS, 2021, 57 (01)
[5]   Use of MALDI-TOF Mass Spectrometry for the Fast Identification of Gram-Positive Fish Pathogens [J].
Assis, Gabriella B. N. ;
Pereira, Felipe L. ;
Zegarra, Alexandra U. ;
Tavares, Guilherme C. ;
Leal, Carlos A. ;
Figueiredo, Henrique C. P. .
FRONTIERS IN MICROBIOLOGY, 2017, 8
[6]   Post-COVID syndrome in non-hospitalised patients with COVID-19: a longitudinal prospective cohort study [J].
Augustin, Max ;
Schommers, Philipp ;
Stecher, Melanie ;
Dewald, Felix ;
Gieselmann, Lutz ;
Gruell, Henning ;
Horn, Carola ;
Vanshylla, Kanika ;
Di Cristanziano, Veronica ;
Osebold, Luise ;
Roventa, Maria ;
Riaz, Toqeer ;
Tschernoster, Nikolai ;
Altmueller, Janine ;
Rose, Leonard ;
Salomon, Susanne ;
Priesner, Vanessa ;
Luers, Jan Christoffer ;
Albus, Christian ;
Rosenkranz, Stephan ;
Gathof, Birgit ;
Faetkenheuer, Gerd ;
Hallek, Michael ;
Klein, Florian ;
Suarez, Isabelle ;
Lehmann, Clara .
LANCET REGIONAL HEALTH-EUROPE, 2021, 6
[7]   Lung-brain axis [J].
Bajinka, Ousman ;
Simbilyabo, Lucette ;
Tan, Yurong ;
Jabang, John ;
Saleem, Shakeel Ahmed .
CRITICAL REVIEWS IN MICROBIOLOGY, 2022, 48 (03) :257-269
[8]   Bacterial Coinfection and Antibiotic Resistance Profiles among Hospitalised COVID-19 Patients [J].
Bazaid, Abdulrahman S. ;
Barnawi, Heba ;
Qanash, Husam ;
Alsaif, Ghaida ;
Aldarhami, Abdu ;
Gattan, Hattan ;
Alharbi, Bandar ;
Alrashidi, Abdulaziz ;
Abu Al-Soud, Waleed ;
Moussa, Safia ;
Alfouzan, Fayez .
MICROORGANISMS, 2022, 10 (03)
[9]   Gut microbiome dysbiosis in antibiotic-treated COVID-19 patients is associated with microbial translocation and bacteremia [J].
Bernard-Raichon, Lucie ;
Venzon, Mericien ;
Klein, Jon ;
Axelrad, Jordan E. ;
Zhang, Chenzhen ;
Sullivan, Alexis P. ;
Hussey, Grant A. ;
Casanovas-Massana, Arnau ;
Noval, Maria G. ;
Valero-Jimenez, Ana M. ;
Gago, Juan ;
Putzel, Gregory ;
Pironti, Alejandro ;
Wilder, Evan ;
Thorpe, Lorna E. ;
Littman, Dan R. ;
Dittmann, Meike ;
Stapleford, Kenneth A. ;
Shopsin, Bo ;
Torres, Victor J. ;
Ko, Albert, I ;
Iwasaki, Akiko ;
Cadwell, Ken ;
Schluter, Jonas .
NATURE COMMUNICATIONS, 2022, 13 (01)
[10]  
Blighe K., 2019, Enhanced volcano: publication-ready volcano plots with enhanced colouring and labeling