Complete genome sequence of a novel robigovirus infecting Mentha arvensis

被引:0
作者
Weng, Hai-Tao [1 ]
Li, Yi-Yuan [1 ]
Chen, Jian-Ping [1 ]
Zhang, Chuan-Xi [1 ]
Li, Jun-Min [1 ]
Xu, Zhong-Tian [1 ]
机构
[1] Ningbo Univ, Inst Plant Virol, State Key Lab Managing Biot & Chem Threats Qual &, Ningbo 315211, Peoples R China
基金
中国国家自然科学基金;
关键词
COMPLETE NUCLEOTIDE-SEQUENCE; MOLECULAR CHARACTERIZATION; VIRUS; DISEASE;
D O I
10.1007/s00705-023-05944-x
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
The complete genomic sequence of a novel robigovirus, provisionally named "Mentha arvensis robigovirus 1" (MARV1), was determined by combining next-generation sequencing (NGS), reverse transcription polymerase chain reaction (RT-PCR), and rapid amplification of cDNA ends (RACE) PCR. The complete genomic sequence of this new virus is 7617 nucleotides in length, excluding the 3 ' poly(A) tail. The MARV1 genome encodes a putative replicase, "triple gene block" proteins, and a coat protein. Phylogenetic analysis demonstrated that MARV1 is a member of the genus Robigovirus, with closest relationships to African oil palm ringspot virus (AOPRV). Furthermore, MARV1-derived small interfering RNAs (siRNAs) showed typical patterns of plant-virus-derived siRNAs produced by the host antiviral RNA interference pathway. This is the first report of a plant virus of the genus Robigovirus in M. arvensis.
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页数:4
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共 13 条
  • [1] Adams MJ, 2004, ARCH VIROL, V149, P1045, DOI [10.1007/s00705-003-0304-0, 10.1007/s00705-004-0304-0]
  • [2] Bremer K, 1998, ANN MO BOT GARD, V85, P531, DOI 10.2307/2992015
  • [3] Exploring the antibacterial, antidiabetic, and anticancer potential of Mentha arvensis extract through in-silico and in-vitro analysis
    Faisal, Shah
    Tariq, Muhammad Hamza
    Ullah, Riaz
    Zafar, Sania
    Rizwan, Muhammad
    Bibi, Nadia
    Khattak, Aishma
    Amir, Noora
    Abdullah
    [J]. BMC COMPLEMENTARY MEDICINE AND THERAPIES, 2023, 23 (01)
  • [4] Full-length transcriptome assembly from RNA-Seq data without a reference genome
    Grabherr, Manfred G.
    Haas, Brian J.
    Yassour, Moran
    Levin, Joshua Z.
    Thompson, Dawn A.
    Amit, Ido
    Adiconis, Xian
    Fan, Lin
    Raychowdhury, Raktima
    Zeng, Qiandong
    Chen, Zehua
    Mauceli, Evan
    Hacohen, Nir
    Gnirke, Andreas
    Rhind, Nicholas
    di Palma, Federica
    Birren, Bruce W.
    Nusbaum, Chad
    Lindblad-Toh, Kerstin
    Friedman, Nir
    Regev, Aviv
    [J]. NATURE BIOTECHNOLOGY, 2011, 29 (07) : 644 - U130
  • [5] Analysis of the complete genome of a virus associated with twisted leaf disease of cherry reveals evidence of a close relationship to unassigned viruses in the family Betaflexiviridae
    James, Delano
    Varga, Aniko
    Lye, David
    [J]. ARCHIVES OF VIROLOGY, 2014, 159 (09) : 2463 - 2468
  • [6] IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
    Lam-Tung Nguyen
    Schmidt, Heiko A.
    von Haeseler, Arndt
    Bui Quang Minh
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 2015, 32 (01) : 268 - 274
  • [7] Molecular Characterization and Detection of African Oil Palm Ringspot Virus
    Lozano, Ivan
    Jose Morales, Francisco
    Karine Martinez, Ana
    Amador Pena, Eduardo
    [J]. JOURNAL OF PHYTOPATHOLOGY, 2010, 158 (03) : 167 - 172
  • [8] Complete genome sequence of a new virus from Allium sativum L in China
    Peng, Zhengyu
    Chen, Yi
    Luo, Zhaopeng
    Peng, Jiejun
    Zheng, Hongying
    Wu, Guanwei
    Rao, Shaofei
    Wu, Jian
    Xu, Zhongtian
    Chen, Jianping
    Lu, Yuwen
    Guo, Fengling
    Yan, Fei
    [J]. ARCHIVES OF VIROLOGY, 2023, 168 (06)
  • [9] Complete nucleotide sequence of cherry necrotic rusty mottle virus
    Rott, ME
    Jelkmann, W
    [J]. ARCHIVES OF VIROLOGY, 2001, 146 (02) : 395 - 401
  • [10] Mint Viruses: Beauty, Stealth, and Disease
    Tzanetakis, Ioannis E.
    Postman, Joseph D.
    Samad, A.
    Martin, Robert R.
    [J]. PLANT DISEASE, 2010, 94 (01) : 4 - 12