Advances in single-cell RNA sequencing and its applications in cancer research

被引:54
|
作者
Huang, Dezhi [1 ,2 ]
Ma, Naya [1 ,2 ]
Li, Xinlei [1 ,2 ]
Gou, Yang [1 ,2 ]
Duan, Yishuo [1 ,2 ]
Liu, Bangdong [1 ,2 ]
Xia, Jing [1 ,2 ]
Zhao, Xianlan [1 ,2 ]
Wang, Xiaoqi [1 ,2 ]
Li, Qiong [1 ,2 ]
Rao, Jun [1 ,2 ,3 ]
Zhang, Xi [1 ,2 ,3 ]
机构
[1] Army Med Univ, Xinqiao Hosp, Med Ctr Hematol, State Key Lab Trauma Burn & Combined Injury, Chongqing 400037, Peoples R China
[2] Jinfeng Lab, Chongqing 401329, Peoples R China
[3] Soochow Univ, Affiliated Hosp 1, Natl Clin Res Ctr Hematol Dis, Suzhou 215006, Peoples R China
关键词
scRNA-seq; Cancer; Heterogeneity; Tumor microenvironment; Treatment; ACUTE LYMPHOBLASTIC-LEUKEMIA; TUMOR MICROENVIRONMENT; LUNG-CANCER; TRANSCRIPTION FACTORS; SEQ REVEALS; IMMUNE MICROENVIRONMENT; MULTICELLULAR ECOSYSTEM; EXPRESSION PROGRAMS; CLONAL EVOLUTION; MELANOMA BRAIN;
D O I
10.1186/s13045-023-01494-6
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Cancers are a group of heterogeneous diseases characterized by the acquisition of functional capabilities during the transition from a normal to a neoplastic state. Powerful experimental and computational tools can be applied to elucidate the mechanisms of occurrence, progression, metastasis, and drug resistance; however, challenges remain. Bulk RNA sequencing techniques only reflect the average gene expression in a sample, making it difficult to understand tumor heterogeneity and the tumor microenvironment. The emergence and development of single-cell RNA sequencing (scRNA-seq) technologies have provided opportunities to understand subtle changes in tumor biology by identifying distinct cell subpopulations, dissecting the tumor microenvironment, and characterizing cellular genomic mutations. Recently, scRNA-seq technology has been increasingly used in cancer studies to explore tumor heterogeneity and the tumor microenvironment, which has increased the understanding of tumorigenesis and evolution. This review summarizes the basic processes and development of scRNA-seq technologies and their increasing applications in cancer research and clinical practice.
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页数:48
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