We propose a method of bottom-up coarse-graining, in which interactions within a coarse-grained model are determined by an artificial neural network trained on structural data obtained from multiple atomistic simulations. The method uses ideas of the inverse Monte Carlo approach, relating changes in the neural network weights with changes in average structural properties, such as radial distribution functions. As a proof of concept, we demonstrate the method on a system interacting by a Lennard-Jones potential modeled by a simple linear network and a single-site coarse-grained model of methanol-water solutions. In the latter case, we implement a nonlinear neural network with intermediate layers trained by atomistic simulations carried out at different methanol concentrations. We show that such a network acts as a transferable potential at the coarse-grained resolution for a wide range of methanol concentrations, including those not included in the training set.
机构:
Los Alamos Natl Lab, Comp Computat & Stat Sci Div, Los Alamos, NM 87545 USALos Alamos Natl Lab, Comp Computat & Stat Sci Div, Los Alamos, NM 87545 USA
Shinkle, Emily
Pachalieva, Aleksandra
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Los Alamos Natl Lab, Earth & Environm Sci Div, Los Alamos, NM 87545 USA
Los Alamos Natl Lab, Ctr Nonlinear Studies, Los Alamos, NM 87545 USALos Alamos Natl Lab, Comp Computat & Stat Sci Div, Los Alamos, NM 87545 USA
Pachalieva, Aleksandra
Bahl, Riti
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Emory Univ, Dept Math, Atlanta, GA 30322 USA
Los Alamos Natl Lab, Theoret Div, Los Alamos, NM 87545 USALos Alamos Natl Lab, Comp Computat & Stat Sci Div, Los Alamos, NM 87545 USA
Bahl, Riti
Matin, Sakib
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Los Alamos Natl Lab, Theoret Div, Los Alamos, NM 87545 USALos Alamos Natl Lab, Comp Computat & Stat Sci Div, Los Alamos, NM 87545 USA
Matin, Sakib
Gifford, Brendan
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Los Alamos Natl Lab, Theoret Div, Los Alamos, NM 87545 USALos Alamos Natl Lab, Comp Computat & Stat Sci Div, Los Alamos, NM 87545 USA
Gifford, Brendan
Craven, Galen T.
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Los Alamos Natl Lab, Theoret Div, Los Alamos, NM 87545 USALos Alamos Natl Lab, Comp Computat & Stat Sci Div, Los Alamos, NM 87545 USA
Craven, Galen T.
Lubbers, Nicholas
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Los Alamos Natl Lab, Comp Computat & Stat Sci Div, Los Alamos, NM 87545 USALos Alamos Natl Lab, Comp Computat & Stat Sci Div, Los Alamos, NM 87545 USA
机构:
Princeton Univ, Program Appl & Computat Math, Princeton, NJ 08544 USA
Princeton Univ, Dept Math, Princeton, NJ 08544 USA
Beijing Inst Big Data Res, Beijing 100871, Peoples R ChinaPrinceton Univ, Program Appl & Computat Math, Princeton, NJ 08544 USA
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Johns Hopkins Univ, Dept Chem & Biomol Engn, Baltimore, MD USAUniv Calif Davis, Dept Chem Engn & Mat Sci, Davis, CA 95616 USA
Bennun, Sandra V.
Hoopes, Matthew I.
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Univ Calif Davis, Grad Grp Biophys, Davis, CA 95616 USAUniv Calif Davis, Dept Chem Engn & Mat Sci, Davis, CA 95616 USA
Hoopes, Matthew I.
Xing, Chenyue
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Univ Calif Davis, Dept Chem Engn & Mat Sci, Davis, CA 95616 USAUniv Calif Davis, Dept Chem Engn & Mat Sci, Davis, CA 95616 USA
Xing, Chenyue
Faller, Roland
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Univ Calif Davis, Dept Chem Engn & Mat Sci, Davis, CA 95616 USA
Univ Calif Davis, Grad Grp Biophys, Davis, CA 95616 USAUniv Calif Davis, Dept Chem Engn & Mat Sci, Davis, CA 95616 USA