Structure, mechanism and inhibition of anthranilate phosphoribosyltransferase

被引:7
|
作者
Scully, Thomas W. W. [1 ,2 ]
Jiao, Wanting [1 ,2 ]
Mittelstaedt, Gerd [1 ,2 ]
Parker, Emily J. J. [1 ,2 ]
机构
[1] Victoria Univ Wellington, Ferrier Res Inst, Wellington 6140, New Zealand
[2] Maurice Wilkins Ctr Mol Biodiscovery, Auckland 1142, New Zealand
关键词
PRT; AnPRT; TrpD; tryptophan biosynthesis; TRANSITION-STATE STRUCTURE; MYCOBACTERIUM-TUBERCULOSIS; CRYSTAL-STRUCTURE; NICOTINAMIDE PHOSPHORIBOSYLTRANSFERASE; ADENINE PHOSPHORIBOSYLTRANSFERASE; TRYPTOPHAN BIOSYNTHESIS; SULFOLOBUS-SOLFATARICUS; SUBSTRATE; FORMS; METABOLISM;
D O I
10.1098/rstb.2022.0039
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Anthranilate phosphoribosyltransferase catalyses the second reaction in the biosynthesis of tryptophan from chorismate in microorganisms and plants. The enzyme is homodimeric with the active site located in the hinge region between two domains. A range of structures in complex with the substrates, substrate analogues and inhibitors have been determined, and these have provided insights into the catalytic mechanism of this enzyme. Substrate 5-phospho-d-ribose 1-diphosphate (PRPP) binds to the C-terminal domain and coordinates to Mg2+, in a site completed by two flexible loops. Binding of the second substrate anthranilate is more complex, featuring multiple binding sites along an anthranilate channel. This multi-modal binding is consistent with the substrate inhibition observed at high concentrations of anthranilate. A series of structures predict a dissociative mechanism for the reaction, similar to the reaction mechanisms elucidated for other phosphoribosyltransferases. As this enzyme is essential for some pathogens, efforts have been made to develop inhibitors for this enzyme. To date, the best inhibitors exploit the multiple binding sites for anthranilate.This article is part of the theme issue 'Reactivity and mechanism in chemical and synthetic biology'.
引用
收藏
页数:9
相关论文
共 50 条
  • [1] Anthranilate phosphoribosyltransferase from the hyperthermophilic archaeon Thermococcus kodakarensis shows maximum activity with zinc and forms a unique dimeric structure
    Perveen, Sumera
    Rashid, Naeem
    Tang, Xiao-Feng
    Imanaka, Tadayuki
    Papageorgiou, Anastassios C.
    FEBS OPEN BIO, 2017, 7 (08): : 1217 - 1230
  • [2] The Substrate Capture Mechanism of Mycobacterium tuberculosis Anthranilate Phosphoribosyltransferase Provides a Mode for Inhibition
    Castell, Alina
    Short, Francesca L.
    Evans, Genevieve L.
    Cookson, Tammie V. M.
    Bulloch, Esther M. M.
    Joseph, Dmitri D. A.
    Lee, Clare E.
    Parker, Emily J.
    Baker, Edward N.
    Lott, J. Shaun
    BIOCHEMISTRY, 2013, 52 (10) : 1776 - 1787
  • [3] Alternative substrates reveal catalytic cycle and key binding events in the reaction catalysed by anthranilate phosphoribosyltransferase from Mycobacterium tuberculosis
    Cookson, Tammie V. M.
    Castell, Alina
    Bulloch, Esther M. M.
    Evans, Genevieve L.
    Short, Francesca L.
    Baker, Edward N.
    Lott, J. Shaun
    Parker, Emily J.
    BIOCHEMICAL JOURNAL, 2014, 461 : 87 - 98
  • [4] The crystal structure of anthranilate phosphoribosyltransferase from the enterobacterium Pectobacterium carotovorum
    Kim, C
    Xuong, NH
    Edwards, S
    Madhusudan
    Yee, MC
    Spraggon, G
    Mills, SE
    FEBS LETTERS, 2002, 523 (1-3): : 239 - 246
  • [5] Functional analysis of a gene encoding Anthranilate phosphoribosyltransferase from rice
    Sikdar, Md. Shafiqul Islam
    Kim, Jung-Sup
    BIOLOGY, ENVIRONMENT AND CHEMISTRY, 2011, : 252 - 256
  • [6] Anthranilate phosphoribosyltransferase: Binding determinants for 5′-phospho-alpha-D-ribosyl-1′-pyrophosphate (PRPP) and the implications for inhibitor design
    Evans, Genevieve L.
    Furkert, Daniel P.
    Abermil, Nacim
    Kundu, Preeti
    de Lange, Katrina M.
    Parker, Emily J.
    Brimble, Margaret A.
    Baker, Edward N.
    Lott, J. Shaun
    BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS, 2018, 1866 (02): : 264 - 274
  • [7] Structures of Mycobacterium tuberculosis Anthranilate Phosphoribosyltransferase Variants Reveal the Conformational Changes That Facilitate Delivery of the Substrate to the Active Site
    Cookson, Tammie V. M.
    Evans, Genevieve L.
    Castell, Alina
    Baker, Edward N.
    Lott, J. Shaun
    Parker, Emily J.
    BIOCHEMISTRY, 2015, 54 (39) : 6082 - 6092
  • [8] Structure and reaction mechanism of human nicotinamide phosphoribosyltransferase
    Takahashi, Ryo
    Nakamura, Shota
    Nakazawa, Takashi
    Minoura, Katsuhiko
    Yoshida, Takuya
    Nishi, Yoshinori
    Kobayashi, Yuji
    Ohkubo, Tadayasu
    JOURNAL OF BIOCHEMISTRY, 2010, 147 (01) : 95 - 107
  • [9] Purification, characterization and crystallization of thermostable anthranilate phosphoribosyltransferase from Sulfolobus solfataricus
    Ivens, A
    Mayans, O
    Szadkowski, H
    Wilmanns, M
    Kirschner, R
    EUROPEAN JOURNAL OF BIOCHEMISTRY, 2001, 268 (08): : 2246 - 2252
  • [10] Activation of Anthranilate Phosphoribosyltransferase from Sulfolobus solfataricus by Removal of Magnesium Inhibition and Acceleration of Product Release
    Schlee, Sandra
    Deuss, Miriam
    Bruning, Marc
    Ivens, Andreas
    Schwab, Thomas
    Hellmann, Nadja
    Mayans, Olga
    Sterner, Reinhard
    BIOCHEMISTRY, 2009, 48 (23) : 5199 - 5209