Hemolytic-Pred: A machine learning-based predictor for hemolytic proteins using position and composition-based features

被引:8
|
作者
Perveen, Gulnaz [1 ]
Alturise, Fahad [2 ,3 ]
Alkhalifah, Tamim [2 ]
Khan, Yaser Daanial [1 ]
机构
[1] Univ Management & Technol, Sch Syst & Technol, Dept Comp Sci, Lahore, Punjab, Pakistan
[2] Qassim Univ, Coll Sci & Arts Ar Rass, Dept Comp, Buraydah, Qassim, Saudi Arabia
[3] Qassim Univ, Coll Sci & Arts Ar Rass, Dept Comp, Buraydah 52571, Saudi Arabia
来源
DIGITAL HEALTH | 2023年 / 9卷
关键词
Hemolysis; hemolytic proteins; XGBoost; statistical moments; machine learning; computational biology; mathematical model; DECISION TREE CLASSIFIER; DEEP REPRESENTATIONS; NEURAL-NETWORK; WEB SERVER; IDENTIFICATION; SITES; MECHANISM; PSEAAC;
D O I
10.1177/20552076231180739
中图分类号
R19 [保健组织与事业(卫生事业管理)];
学科分类号
摘要
Objective: The objective of this study is to propose a novel in-silico method called Hemolytic-Pred for identifying hemolytic proteins based on their sequences, using statistical moment-based features, along with position-relative and frequency-relative information. Methods: Primary sequences were transformed into feature vectors using statistical and position-relative moment-based features. Varying machine learning algorithms were employed for classification. Computational models were rigorously evaluated using four different validation. The Hemolytic-Pred webserver is available for further analysis at http://ec2-54-160-229-10.compute-1.amazonaws.com/. Results: XGBoost outperformed the other six classifiers with an accuracy value of 0.99, 0.98, 0.97, and 0.98 for self-consistency test, 10-fold cross-validation, Jackknife test, and independent set test, respectively. The proposed method with the XGBoost classifier is a workable and robust solution for predicting hemolytic proteins efficiently and accurately. Conclusions: The proposed method of Hemolytic-Pred with XGBoost classifier is a reliable tool for the timely identification of hemolytic cells and diagnosis of various related severe disorders. The application of Hemolytic-Pred can yield profound benefits in the medical field.
引用
收藏
页数:19
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